Factsheet for PGSC0003DMT400026240

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025170.1.1	Tomato	nucleus	91.28	94.61
PGSC0003DMT400076932	Potato	nucleus	66.51	71.78
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	53.67	59.59
CDY27821	Canola	cytosol	37.31	54.95
CDY00533	Canola	cytosol	37.16	54.48
Bra028312.1-P	Field mustard	cytosol	37.46	53.96
KRG91573	Soybean	plastid	45.26	49.83
KRH35251	Soybean	plastid	44.5	49.32
AT5G52510.1	Thale cress	nucleus	47.71	48.75
CDY27063	Canola	cytosol, plastid	42.35	48.09
Bra022596.1-P	Field mustard	plastid	42.2	47.67
CDX91655	Canola	cytosol	42.81	47.62
KRH38397	Soybean	plastid	39.14	47.41
KRH08880	Soybean	plastid	46.94	46.73
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	36.24	42.17
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	36.85	41.27
GSMUA_AchrUn_...	Banana	plastid	35.78	40.0
GSMUA_Achr1P03650_001	Banana	mitochondrion	33.64	38.6
GSMUA_Achr9P18770_001	Banana	cytosol	33.49	38.49
Zm00001d002573_P001	Maize	cytosol	35.47	37.24
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	35.47	37.24
Os04t0580300-01	Rice	cytosol, nucleus, plastid	34.56	36.51
Os02t0681900-01	Rice	cytosol	34.1	36.08
EES05727	Sorghum	cytosol	34.56	35.93
Zm00001d051461_P001	Maize	cytosol	33.03	35.58
TraesCS2D01G393200.1	Wheat	cytosol	33.95	35.41
EES12703	Sorghum	cytosol, nucleus, plastid	35.17	35.28
TraesCS2B01G413500.1	Wheat	cytosol	33.95	35.18
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	33.95	35.18
GSMUA_Achr4P24960_001	Banana	cytosol	25.99	35.05
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	29.05	33.99
PGSC0003DMT400034763	Potato	cytosol	24.46	29.96
PGSC0003DMT400015696	Potato	cytosol	24.46	29.91
PGSC0003DMT400060553	Potato	cytosol	23.39	29.2
PGSC0003DMT400057111	Potato	nucleus	23.55	28.68
HORVU2Hr1G094040.2	Barley	cytosol, plastid	16.82	28.57
PGSC0003DMT400056120	Potato	cytosol	23.55	27.55
PGSC0003DMT400049492	Potato	cytosol	24.31	27.32
PGSC0003DMT400021748	Potato	nucleus	23.09	27.01
PGSC0003DMT400005480	Potato	cytosol	15.6	20.94
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	17.13	17.34
PGSC0003DMT400049420	Potato	cytosol	16.05	15.81
PGSC0003DMT400077972	Potato	cytosol	17.89	15.56
PGSC0003DMT400078286	Potato	nucleus	15.75	15.44
PGSC0003DMT400022997	Potato	cytosol, plastid	16.97	14.59
PGSC0003DMT400016258	Potato	cytosol	16.05	14.42
PGSC0003DMT400069949	Potato	cytosol	15.14	13.25

Protein Annotations

EntrezGene:102587836	MapMan:15.5.12	ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1AMW7
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400010121	PGSC:PGSC0003DMG400010121	EnsemblPlants:PGSC0003DMT400026240	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF4	InterPro:TF_GRAS	UniParc:UPI000296FC54	RefSeq:XP_006353907.1	SEG:seg	:

Description

GRAS10 [Source:PGSC_GENE;Acc:PGSC0003DMG400010121]

Coordinates

chr3:+:43813189..43815687

Molecular Weight (calculated)

71943.9 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.415

Length

654 amino acids

Sequence
(BLAST)

001: MSSGFSGEFY GAGGSNNGRS TINNNSQRPY SSPLSGILPD PVTQIVHQGR PNLMGKRSLA EFQQQQQLQF LQLQQQQQQQ KQQQQQMMLL QQQQQQGLGF
101: YLRNVKPRSY QQSSPMSPLS PVDFSVAAAA ASSISSEFSS NSNVSTMMNT RHALPVHQQF RSQPANIGGF LSPGIQNYST GVSSLNPVQN RATIGVQELL
201: SQESDKKMMN CLQEIEKQLL DDNDEEEGDT VSVVTNNEWS ETIQNLISPC HNQNQNQIQK LASLSPSSST SSCASSTESP SISCPKQSII EAATAISDEK
301: NDVAVEILTR LSQVANIRGS SDQRLTAYMV AALRSRVNPI DYPPPVLELR SREHTDTTHN LYEVSPCFKL GFMAANLAIL EAVADHPFNK LHVIDFDIGQ
401: GGQYLHLLHA LAAKKSNSPA VLKITAFTEQ AGGVDERFNS INVELNSVAN RLGVCLYFNV MSCKVTDLSR ENLGLEPDDA LAVNFAFKLY RLPDESVTTE
501: NLRDELLRRV KALSPKVVTV VEQEMNGNTA PFLARVNEAC GHYGAIFDSL DATVSRDNMD RVRIEEGLSR KMSNSVACEG RDRVERCEVF GKWRARMSMA
601: GFGPRPVSQI VADSLRSKLN SGTRGNPGFT VNEQSGGICF GWMGRTLTVA SAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.