Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27821 | Canola | cytosol | 57.97 | 83.56 |
| CDY00533 | Canola | cytosol | 57.5 | 82.51 |
| Bra028312.1-P | Field mustard | cytosol | 57.97 | 81.72 |
| CDX91655 | Canola | cytosol | 73.12 | 79.59 |
| CDY27063 | Canola | cytosol, plastid | 69.84 | 77.6 |
| Bra022596.1-P | Field mustard | plastid | 69.38 | 76.68 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 48.91 | 53.14 |
| Solyc03g025170.1.1 | Tomato | nucleus | 48.75 | 49.45 |
| KRG91573 | Soybean | plastid | 45.62 | 49.16 |
| KRH35251 | Soybean | plastid | 44.84 | 48.64 |
| PGSC0003DMT400076932 | Potato | nucleus | 45.94 | 48.51 |
| KRH38397 | Soybean | plastid | 40.78 | 48.33 |
| Solyc06g036170.1.1 | Tomato | nucleus | 44.69 | 47.83 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 48.75 | 47.71 |
| KRH08880 | Soybean | plastid | 48.44 | 47.18 |
| GSMUA_AchrUn_... | Banana | plastid | 36.88 | 40.34 |
| GSMUA_Achr4P26400_001 | Banana | cytosol, mitochondrion, plastid | 36.56 | 40.07 |
| GSMUA_Achr9P18770_001 | Banana | cytosol | 35.47 | 39.89 |
| GSMUA_Achr5P12810_001 | Banana | cytosol, plastid | 34.22 | 38.97 |
| GSMUA_Achr1P03650_001 | Banana | mitochondrion | 34.06 | 38.25 |
| GSMUA_Achr4P24960_001 | Banana | cytosol | 28.44 | 37.53 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 35.78 | 37.0 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 35.94 | 36.92 |
| Os02t0681900-01 | Rice | cytosol | 35.47 | 36.73 |
| Zm00001d002573_P001 | Maize | cytosol | 35.62 | 36.6 |
| Zm00001d051461_P001 | Maize | cytosol | 33.59 | 35.42 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 34.84 | 35.34 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 34.53 | 35.25 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 34.69 | 35.18 |
| EES05727 | Sorghum | cytosol | 34.38 | 34.98 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 34.84 | 34.2 |
| AT2G04890.1 | Thale cress | cytosol | 20.47 | 31.72 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 18.91 | 31.43 |
| AT5G48150.4 | Thale cress | cytosol | 22.34 | 29.18 |
| AT1G21450.1 | Thale cress | nucleus | 26.09 | 28.16 |
| AT4G17230.1 | Thale cress | cytosol | 21.72 | 26.28 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 23.59 | 25.12 |
| AT3G46600.1 | Thale cress | cytosol | 16.41 | 18.01 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 16.56 | 16.83 |
| AT5G59450.1 | Thale cress | nucleus | 15.62 | 16.39 |
| AT1G07520.3 | Thale cress | cytosol | 15.94 | 14.66 |
| AT2G29060.1 | Thale cress | cytosol | 15.62 | 14.41 |
| AT1G07530.1 | Thale cress | cytosol | 17.03 | 14.17 |
| AT2G37650.1 | Thale cress | cytosol | 15.31 | 13.65 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:835327 | ProteinID:AED96223.1 | EMBL:AF036305 | ArrayExpress:AT5G52510 | EnsemblPlantsGene:AT5G52510 |
| RefSeq:AT5G52510 | TAIR:AT5G52510 | RefSeq:AT5G52510-TAIR-G | EnsemblPlants:AT5G52510.1 | TAIR:AT5G52510.1 | EMBL:AY099686 |
| EMBL:AY128868 | Unigene:At.22412 | ProteinID:BAB10182.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_200064.3 | PFAM:PF03514 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF130 | UniProt:Q9FYR7 | Symbol:SCL8 |
| InterPro:Scarecrow-like_8 | InterPro:TF_GRAS | UniParc:UPI000009EEBF | SEG:seg | : | : |
Description
SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
Coordinates
chr5:+:21307016..21309341
Molecular Weight (calculated)
69154.4 Da
IEP (calculated)
4.861
GRAVY (calculated)
-0.362
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.