CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91573	Soybean	plastid	89.49	88.89
KRH38397	Soybean	plastid	52.2	57.04
KRH08880	Soybean	plastid	62.2	55.86
CDY27821	Canola	cytosol	39.83	52.93
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	52.03	52.12
CDY00533	Canola	cytosol	39.15	51.79
Bra028312.1-P	Field mustard	cytosol	39.15	50.88
Bra022596.1-P	Field mustard	plastid	45.93	46.8
CDY27063	Canola	cytosol, plastid	45.42	46.53
Solyc06g036170.1.1	Tomato	nucleus	46.95	46.32
Solyc03g025170.1.1	Tomato	nucleus	49.49	46.28
CDX91655	Canola	cytosol	46.1	46.26
PGSC0003DMT400076932	Potato	nucleus	47.46	46.2
AT5G52510.1	Thale cress	nucleus	48.64	44.84
PGSC0003DMT400026240	Potato	nucleus, plastid	49.32	44.5
GSMUA_AchrUn_...	Banana	plastid	36.61	36.92
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	36.27	36.64
GSMUA_Achr9P18770_001	Banana	cytosol	34.92	36.2
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	34.07	35.77
GSMUA_Achr1P03650_001	Banana	mitochondrion	33.73	34.91
Os02t0681900-01	Rice	cytosol	35.08	33.5
Zm00001d002573_P001	Maize	cytosol	35.25	33.39
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	35.08	33.23
Os04t0580300-01	Rice	cytosol, nucleus, plastid	34.75	33.12
Zm00001d051461_P001	Maize	cytosol	34.07	33.11
EES05727	Sorghum	cytosol	34.92	32.75
TraesCS2B01G413500.1	Wheat	cytosol	34.24	32.01
TraesCS2D01G393200.1	Wheat	cytosol	33.9	31.9
GSMUA_Achr4P24960_001	Banana	cytosol	26.1	31.75
EES12703	Sorghum	cytosol, nucleus, plastid	34.92	31.6
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	33.73	31.54
KRH18097	Soybean	cytosol	29.83	29.78
KRH74015	Soybean	cytosol	27.29	29.76
KRH53364	Soybean	cytosol	30.17	29.67
KRH15917	Soybean	cytosol	29.66	29.61
KRH14104	Soybean	cytosol	27.29	29.54
KRH64568	Soybean	cytosol	29.83	29.53
KRH11548	Soybean	nucleus	26.27	28.08
KRH01979	Soybean	cytosol	25.93	28.07
HORVU2Hr1G094040.2	Barley	cytosol, plastid	18.31	28.05
KRH36572	Soybean	cytosol	25.76	27.74
KRG98562	Soybean	nucleus	25.59	27.71
KRH51175	Soybean	cytosol	25.42	27.68
KRH22210	Soybean	cytosol, plastid	26.78	27.38
KRH46306	Soybean	cytosol	25.25	27.34
KRH27129	Soybean	plastid	25.93	27.27
KRH55599	Soybean	plastid	25.42	26.41
KRH14274	Soybean	cytosol	23.9	25.87
KRH25905	Soybean	cytosol, plastid	24.75	25.7
KRH73868	Soybean	cytosol	23.56	25.5
KRH23089	Soybean	cytosol	18.98	17.39
KRH10243	Soybean	nucleus	19.49	17.29
KRH38269	Soybean	cytosol	10.34	17.28
KRH10240	Soybean	cytosol	17.46	17.0
KRH29773	Soybean	cytosol	17.63	16.94
KRH29771	Soybean	cytosol	18.64	16.18
KRH23090	Soybean	vacuole	16.95	16.1
KRH24780	Soybean	cytosol	17.97	16.06
KRH24773	Soybean	nucleus	18.64	16.01
KRH10241	Soybean	cytosol, nucleus, peroxisome	18.64	15.99
KRH49113	Soybean	cytosol	19.83	15.94
KRG99969	Soybean	cytosol	19.83	15.88
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	19.83	15.75
KRH24778	Soybean	nucleus	17.97	15.68
KRH23094	Soybean	cytosol	14.58	15.55
KRH29774	Soybean	cytosol	16.61	15.53
KRH23095	Soybean	cytosol	17.12	15.37
KRH65839	Soybean	cytosol, plastid	18.98	15.34
KRH24775	Soybean	cytosol	17.63	15.29
KRH29779	Soybean	cytosol	18.81	14.96
KRH29775	Soybean	nucleus	16.95	14.86

Protein Annotations

EntrezGene:100797571	MapMan:15.5.12	EMBL:ACUP02006662	EnsemblPlantsGene:GLYMA_10G232000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LDM9	InterPro:IPR005202	EnsemblPlants:KRH35251
ProteinID:KRH35251	ProteinID:KRH35251.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF130
InterPro:Scarecrow-like_8	InterPro:TF_GRAS	UniParc:UPI000233C7C3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:46154299..46156888

Molecular Weight (calculated)

65224.5 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.302

Length

590 amino acids

Sequence
(BLAST)

001: MSSPRFPGGG ASDFYGGAGG FPSQSTALQP TMNNHSATTH HPLYRSQPSI FLNPSSHIAQ HQTPTLIGKR TLAEFQTHNH SLNLINNNDN LLLSNHQLRS
101: VKPRTFQHTE LSTFPSRRYG LPLLHHLRPN AVNAQQQPVT NSILANTNYL SPVHSRLTAT HEPEKNLIAL RLQELEKQLL EDNEDDAVSV ITTTTSEWSH
201: TIQNLITPQK PASSSPTSST TSSNTSVESS SYKQSLTEAA TAISEGKFDA ATEILTRLSL NSDQRFVNCM VSALKSRMNH VEYPPPVAEL FGTEHAESTQ
301: LLFEYSLFFK VARMVANIAI LESALTESGK LCVVDFDICD ENQYVSLLHE LSARRKGAPA AVKIVVVTEN CADDERLNIV GVLLGRHAEK LGIGFEFKVL
401: TRRIAELTRE SLGCDADEPL AVNFAYKLYR MPDESVSTEN PRDKLLRRVK TLAPRVVTLV EQDANANTAP FVARVTELCA YYGALFDSLE STMARENLKR
501: VRIEEGLSRK VVNSVACEGR DRVERCEVFG KWRARMSMAG FRLKPLSQRV ADSIKARLGG AGNRVAVKVE NGGICFGWMG RTLTVASAWC

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.