Factsheet for GSMUA_Achr4P24960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18770_001	Banana	cytosol	72.16	61.51
GSMUA_Achr1P03650_001	Banana	mitochondrion	63.71	54.21
GSMUA_AchrUn_...	Banana	plastid	60.0	49.74
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	58.76	48.8
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	52.99	45.73
HORVU2Hr1G094040.2	Barley	cytosol, plastid	29.69	37.4
Os02t0681900-01	Rice	cytosol	45.77	35.92
Zm00001d002573_P001	Maize	cytosol	45.15	35.15
CDY27821	Canola	cytosol	31.75	34.68
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	44.54	34.67
TraesCS2D01G393200.1	Wheat	cytosol	44.54	34.45
Os04t0580300-01	Rice	cytosol, nucleus, plastid	43.92	34.41
TraesCS2B01G413500.1	Wheat	cytosol	44.74	34.39
CDY00533	Canola	cytosol	31.55	34.3
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	44.54	34.23
Bra028312.1-P	Field mustard	cytosol	31.55	33.7
Zm00001d051461_P001	Maize	cytosol	41.65	33.28
EES05727	Sorghum	cytosol	43.09	33.23
EES12703	Sorghum	cytosol, nucleus, plastid	43.09	32.06
Bra022596.1-P	Field mustard	plastid	36.7	30.74
CDY27063	Canola	cytosol, plastid	36.49	30.73
CDX91655	Canola	cytosol	36.49	30.1
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	36.08	29.71
GSMUA_Achr6P11780_001	Banana	cytosol	20.82	29.53
AT5G52510.1	Thale cress	nucleus	37.53	28.44
Solyc06g036170.1.1	Tomato	nucleus	34.23	27.76
Solyc03g025170.1.1	Tomato	nucleus	35.46	27.26
KRG91573	Soybean	plastid	32.99	26.94
PGSC0003DMT400076932	Potato	nucleus	33.4	26.73
KRH08880	Soybean	plastid	36.08	26.64
KRH35251	Soybean	plastid	31.75	26.1
PGSC0003DMT400026240	Potato	nucleus, plastid	35.05	25.99
KRH38397	Soybean	plastid	28.45	25.56
GSMUA_Achr10P...	Banana	cytosol	27.84	24.46
GSMUA_Achr3P02410_001	Banana	nucleus	27.84	23.0
GSMUA_Achr4P07010_001	Banana	cytosol	14.23	21.04
GSMUA_Achr4P11050_001	Banana	nucleus	16.7	20.4
GSMUA_Achr6P24310_001	Banana	cytosol	22.27	20.19
GSMUA_AchrUn_...	Banana	nucleus	15.67	17.76
GSMUA_Achr8P03610_001	Banana	cytosol	5.15	17.36
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	16.91	15.77
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	17.11	14.24
GSMUA_Achr5P08320_001	Banana	cytosol	12.58	13.59
GSMUA_Achr10P...	Banana	nucleus	11.96	13.12
GSMUA_Achr7P15080_001	Banana	cytosol	15.05	12.21
GSMUA_Achr8P02550_001	Banana	nucleus	9.48	11.73
GSMUA_Achr10P...	Banana	cytosol	14.43	11.69
GSMUA_Achr6P34090_001	Banana	nucleus	13.81	10.95
GSMUA_AchrUn_...	Banana	cytosol	12.78	9.41

Protein Annotations

EnsemblPlants:GSMUA_Achr4P24960_001	EnsemblPlants:GSMUA_Achr4T24960_001	EnsemblPlantsGene:GSMUA_Achr4G24960_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002949648
UniProt:M0SRV7	MapMan:15.5.12	:	:	:	:

Description

chitin-inducible gibberellin-responsive protein 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G24960_001]

Coordinates

chr4:-:24609339..24611066

Molecular Weight (calculated)

51410.3 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.175

Length

485 amino acids

Sequence
(BLAST)

001: MASGFPGREL GLGGNGEGNL LKRTLLDMER QQMQHAILLR SVRQRTQAVP SVSMFDPVVG GLSCNSSAAA APERMGSSLS SVDCSEPGFT ARTGLPPPVS
101: ATATVNLPAP ESRSSGSMRD QLRELERRLL LDDEEEAEAS APSGSAVTHA EWGEAIQRLI SPPPPLLPTA VSRLSPSPTD SSSSTVSFAS CSPPSSLPSP
201: PPSRQMLLDT ATALGEGNLE AVRANLAVLK RAADPRGDPE HRLMAVMIAA LLSRLNHPQV GSSHPITDLR SPEHFMATQM LYDLSPCFKL GFVAASSAIL
301: EATKEESKIH IVDFEVGQGG QYDALLLALA KRRCPPAVRI TAVADPSSPF TNINIGDMRA VGDRIKNLAE RAGVRLRFRV VSLRAAELDA ASLGCEPGEE
401: ALIANLPFVL SRVPDESVSP DNPRDELLRR AAARGSPDRG WAEAGLARRA VNAVAREGAE REEAGGLALG LGWMGRVLTV ASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.