Factsheet for GSMUA_Achr9P12070_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	25.19	90.97
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	63.46	56.6
GSMUA_Achr4P07010_001	Banana	cytosol	34.23	54.27
GSMUA_Achr6P24310_001	Banana	cytosol	55.38	53.83
TraesCS2B01G239400.1	Wheat	cytosol	55.96	51.05
TraesCS2A01G214400.1	Wheat	cytosol	55.77	50.88
HORVU2Hr1G043780.1	Barley	cytosol	55.77	50.88
Os07t0545800-01	Rice	cytosol, nucleus	55.77	50.79
EER97346	Sorghum	cytosol	55.58	50.7
TraesCS2D01G220200.1	Wheat	cytosol	55.38	50.53
Solyc06g035620.2.1	Tomato	cytosol	30.0	47.85
Zm00001d006551_P001	Maize	golgi, mitochondrion	55.38	46.68
KRH55599	Soybean	plastid	49.23	45.07
GSMUA_Achr4P11050_001	Banana	nucleus	34.23	44.84
VIT_19s0014g04940.t01	Wine grape	cytosol	49.23	43.91
KRH22210	Soybean	cytosol, plastid	48.65	43.85
KRH25905	Soybean	cytosol, plastid	47.5	43.49
GSMUA_AchrUn_...	Banana	nucleus	35.58	43.22
KRH27129	Soybean	plastid	46.15	42.78
Solyc12g005340.1.1	Tomato	cytosol	44.23	41.22
PGSC0003DMT400056120	Potato	cytosol	44.23	41.14
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	45.96	40.99
GSMUA_Achr6P11780_001	Banana	cytosol	26.92	40.94
PGSC0003DMT400049492	Potato	cytosol	45.58	40.72
GSMUA_Achr10P...	Banana	cytosol	32.5	30.62
GSMUA_Achr3P02410_001	Banana	nucleus	33.27	29.47
GSMUA_AchrUn_...	Banana	plastid	23.27	20.68
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	22.31	20.64
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	22.69	20.21
GSMUA_Achr1P03650_001	Banana	mitochondrion	22.12	20.18
GSMUA_Achr9P18770_001	Banana	cytosol	21.92	20.04
GSMUA_Achr4P24960_001	Banana	cytosol	15.77	16.91
GSMUA_Achr8P02550_001	Banana	nucleus	12.12	16.07
GSMUA_Achr5P08320_001	Banana	cytosol	13.65	15.81
GSMUA_Achr10P...	Banana	nucleus	12.69	14.93
GSMUA_AchrUn_...	Banana	cytosol	18.08	14.26
GSMUA_Achr6P34090_001	Banana	nucleus	16.73	14.22
GSMUA_Achr10P...	Banana	cytosol	16.15	14.02
GSMUA_Achr7P15080_001	Banana	cytosol	12.88	11.2

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12070_001	EnsemblPlants:GSMUA_Achr9T12070_001	EnsemblPlantsGene:GSMUA_Achr9G12070_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	UniParc:UPI000296FB5B	UniProt:M0TZL6
MapMan:15.5.12	:	:	:	:	:

Description

Chitin-inducible gibberellin-responsive protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12070_001]

Coordinates

chr9:+:7836644..7842970

Molecular Weight (calculated)

58426.6 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.452

Length

520 amino acids

Sequence
(BLAST)

001: MPTVLSHPGS LLRRKAEWSG CSRSIPNLRD VIHGNQKHLD EPPSCSPRSI GSSEFLNPLA HAVIVNQATS TPTGNASSLA TALLGNHVHH AASTPRFSHQ
101: TDLQKSSAAV TCQKFGEKFV KWESLEAHHL SKHAGIIEVT AIRILSRNNK QNRLVPSDSL YAVSRQSMRH ALHEIETVLM APDTDEPTTS TSAEMTENKQ
201: PPLTRQRSRT WTHATQLESA DRIHPHYLSG RCLNPEVRPE KRQREMSYPP CDNVKQLLIK CAEALSENKI EEFKLLAEEA RSVVSISGEP IQRLGAYMLE
301: GLVARHESSG TNIYHALRCR EPEGSELLSY MRILYDICPY FKFGPGEALA VNFTLQLHHT PDESVDVNNP RDGLLRLVKG LSPKVTTLVE QESNTNTTPF
401: LTRFVETLDY YSAMFESIDV TLPRDSKERI NVEQHCLAKD IVNIIACEGK DRIERHELLG KWRSRLSMAG FKPYPLSPYV NSVIKTLLGY YSDKYALVEK
501: DGTLLLGWKN RNLISASAWH

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.