Factsheet for GSMUA_AchrUn_randomP18920_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G04890.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07010_001	Banana	cytosol	61.68	80.49
GSMUA_Achr4P11050_001	Banana	nucleus	71.26	76.83
GSMUA_Achr8P03610_001	Banana	cytosol	23.13	68.75
VIT_12s0057g00560.t01	Wine grape	cytosol	66.12	51.93
KRH14104	Soybean	cytosol	65.19	51.19
KRH74015	Soybean	cytosol	64.49	51.02
VIT_19s0090g01740.t01	Wine grape	cytosol	63.55	49.91
AT5G48150.4	Thale cress	cytosol	56.78	49.59
Solyc07g047950.1.1	Tomato	mitochondrion	62.62	49.17
Bra015156.1-P	Field mustard	cytosol	36.45	49.06
TraesCS5A01G409800.1	Wheat	nucleus, plastid	57.01	48.7
PGSC0003DMT400015696	Potato	cytosol	60.75	48.6
CDY00883	Canola	cytosol	45.33	47.9
CDY54511	Canola	cytosol, nucleus, plastid	55.61	47.89
CDX86324	Canola	cytosol, nucleus, plastid	55.61	47.89
TraesCS5A01G414000.1	Wheat	cytosol	47.66	47.89
AT2G04890.1	Thale cress	cytosol	45.79	47.46
CDY19966	Canola	cytosol	54.67	47.37
Bra036185.1-P	Field mustard	cytosol	54.67	47.27
CDY05700	Canola	cytosol, plastid	54.67	47.08
CDY00074	Canola	cytosol, plastid	54.67	47.08
Os07t0583600-01	Rice	plasma membrane	59.81	47.06
Bra020715.1-P	Field mustard	cytosol, plastid	54.44	46.88
CDY71174	Canola	cytosol, plastid	54.44	46.88
Bra026077.1-P	Field mustard	cytosol	32.01	46.6
TraesCS2A01G189600.1	Wheat	cytosol	59.35	45.85
PGSC0003DMT400057111	Potato	nucleus	57.48	45.81
EER97449	Sorghum	cytosol	58.41	45.7
TraesCS2B01G217500.1	Wheat	cytosol	59.11	45.67
TraesCS5D01G419400.2	Wheat	cytosol	58.64	45.64
Solyc07g065270.1.1	Tomato	nucleus	57.24	45.54
TraesCS2D01G198200.1	Wheat	cytosol	58.88	45.41
Zm00001d030500_P001	Maize	nucleus	57.48	45.39
Zm00001d021946_P001	Maize	cytosol	59.11	45.34
Zm00001d006701_P001	Maize	cytosol	58.41	45.13
HORVU2Hr1G036280.1	Barley	cytosol	58.64	45.06
Os03t0193000-01	Rice	plastid	56.31	45.05
EER95348	Sorghum	cytosol	56.07	44.78
CDY71156	Canola	cytosol, plastid	40.65	44.62
HORVU4Hr1G071670.1	Barley	cytosol	55.84	44.59
Zm00001d048199_P001	Maize	mitochondrion, nucleus	55.84	44.59
Bra018860.1-P	Field mustard	nucleus	54.67	44.57
VIT_00s0463g00020.t01	Wine grape	nucleus	56.54	44.4
TraesCS4B01G266700.1	Wheat	cytosol	55.37	44.13
TraesCS4D01G266400.1	Wheat	cytosol	55.14	44.03
CDY37124	Canola	nucleus	42.99	43.81
CDY22807	Canola	nucleus	42.99	43.81
KRG98562	Soybean	nucleus	55.14	43.3
KRH14274	Soybean	cytosol	54.67	42.94
KRH73868	Soybean	cytosol	54.44	42.75
KRH11548	Soybean	nucleus	54.91	42.57
KRH46306	Soybean	cytosol	53.5	42.02
KRH36572	Soybean	cytosol	53.5	41.79
TraesCS4A01G039000.1	Wheat	nucleus	47.66	41.72
PGSC0003DMT400034763	Potato	cytosol	51.4	41.2
Solyc11g012510.1.1	Tomato	mitochondrion	52.1	41.14
PGSC0003DMT400060553	Potato	cytosol	49.53	40.46
KRH51175	Soybean	cytosol	51.17	40.41
KRH01979	Soybean	cytosol	51.4	40.37
GSMUA_Achr6P11780_001	Banana	cytosol	32.01	40.06
HORVU5Hr1G099160.1	Barley	plastid	58.64	39.84
Solyc04g014830.1.1	Tomato	mitochondrion	50.7	39.24
AT1G50600.2	Thale cress	golgi, mitochondrion	54.91	39.1
PGSC0003DMT400021748	Potato	nucleus	49.53	37.92
GSMUA_Achr6P24310_001	Banana	cytosol	46.96	37.57
CDY50128	Canola	cytosol, plastid	46.26	37.15
AT4G17230.1	Thale cress	cytosol	45.79	37.05
Bra021063.1-P	Field mustard	plastid	45.79	36.98
CDY58168	Canola	plastid	45.79	36.98
CDY35589	Canola	cytosol	45.79	36.91
Bra026237.1-P	Field mustard	plastid	45.56	36.45
CDY42968	Canola	cytosol	45.56	36.45
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	43.22	35.58
KRH38269	Soybean	cytosol	28.97	35.13
CDY07309	Canola	cytosol	19.39	34.58
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	25.47	32.73
GSMUA_Achr10P...	Banana	cytosol	41.59	32.25
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	41.59	30.53
GSMUA_Achr3P02410_001	Banana	nucleus	40.65	29.64
GSMUA_Achr1P03650_001	Banana	mitochondrion	27.1	20.35
GSMUA_AchrUn_...	Banana	plastid	27.57	20.17
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	26.4	20.11
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	26.64	19.52
GSMUA_Achr9P18770_001	Banana	cytosol	25.7	19.33
GSMUA_Achr8P02550_001	Banana	nucleus	17.52	19.13
GSMUA_Achr10P...	Banana	nucleus	18.46	17.87
GSMUA_Achr5P08320_001	Banana	cytosol	18.69	17.82
GSMUA_Achr6P34090_001	Banana	nucleus	24.3	16.99
GSMUA_Achr10P...	Banana	cytosol	22.43	16.03
GSMUA_Achr4P24960_001	Banana	cytosol	17.76	15.67
GSMUA_AchrUn_...	Banana	cytosol	22.43	14.57
GSMUA_Achr7P15080_001	Banana	cytosol	19.63	14.05

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP18920_001	EnsemblPlants:GSMUA_AchrUn_randomT18920_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG18920_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:CIGR2	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF31	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002964E98	UniProt:M0UAF1	MapMan:15.5.12	:	:	:

Description

Chitin-inducible gibberellin-responsive protein 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18920_001]

Coordinates

chrchrUn_random:-:91097963..91101648

Molecular Weight (calculated)

48632.2 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.473

Length

428 amino acids

Sequence
(BLAST)

001: MQASTNYKVL SKQHQSYNQN LGRDPESRFM PQNYLTSHCD SSADGFQQGN SHHQTIHDQF YTLESSSEAA NFTTHNSPSS PSYSPISRSP ASHQDSQSDN
101: NYDSPISYSC ITEDSNDLKH KLREIEAAML GPDSDSIDSF ENAYSSYISL EQEKWQQVMG TPRGDLKQIL IACARAVENN DILVVEWLIP KLRQMVSVSG
201: EPIQRLGAYL LEGLVAKLAS SGSSIYKALK CKEPTSSDLL SYMHILYDVC PYFKFGYMSA NGAIAEALKD ESVSTRNYRD RLLQMIKSLS PTVVTLVEQE
301: SNTNTAPFFP RFLETVDYYA AIFESIDVTL PRENKERINV EQHCLARDIV NIIACEGDER VERHELFGKW RSRFMMAGFR PYPLSPLVNA TIKMLLENYC
401: ENYRLEERDG VLYLGWKNRA LVVSCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.