Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G039000.1 | Wheat | nucleus | 89.37 | 97.95 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 97.57 | 97.57 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 95.34 | 95.16 |
| Os03t0193000-01 | Rice | plastid | 80.78 | 80.93 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 75.0 | 75.0 |
| EER95348 | Sorghum | cytosol | 75.0 | 75.0 |
| Bra026077.1-P | Field mustard | cytosol | 35.26 | 64.29 |
| Bra015156.1-P | Field mustard | cytosol | 37.13 | 62.58 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 38.06 | 62.2 |
| HORVU5Hr1G099160.1 | Barley | plastid | 69.96 | 59.52 |
| CDY00883 | Canola | cytosol | 44.78 | 59.26 |
| AT2G04890.1 | Thale cress | cytosol | 44.59 | 57.87 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 42.72 | 57.68 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 57.65 | 56.7 |
| CDY07309 | Canola | cytosol | 25.19 | 56.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.59 | 55.84 |
| CDY71156 | Canola | cytosol, plastid | 40.3 | 55.38 |
| AT5G48150.4 | Thale cress | cytosol | 50.0 | 54.69 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 50.56 | 54.53 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 50.37 | 54.33 |
| CDY05700 | Canola | cytosol, plastid | 50.37 | 54.33 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.22 | 54.31 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 50.19 | 54.12 |
| CDY71174 | Canola | cytosol, plastid | 50.19 | 54.12 |
| CDY19966 | Canola | cytosol | 49.81 | 54.05 |
| PGSC0003DMT400015696 | Potato | cytosol | 53.92 | 54.02 |
| KRH74015 | Soybean | cytosol | 54.48 | 53.97 |
| CDY22807 | Canola | nucleus | 42.16 | 53.81 |
| CDY37124 | Canola | nucleus | 42.16 | 53.81 |
| Bra036185.1-P | Field mustard | cytosol | 49.63 | 53.74 |
| KRH14104 | Soybean | cytosol | 54.48 | 53.58 |
| CDY00074 | Canola | cytosol, plastid | 49.63 | 53.52 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.1 | 53.21 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 54.1 | 52.06 |
| Bra018860.1-P | Field mustard | nucleus | 50.56 | 51.62 |
| Solyc07g065270.1.1 | Tomato | nucleus | 51.31 | 51.12 |
| PGSC0003DMT400057111 | Potato | nucleus | 50.93 | 50.84 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 51.49 | 50.64 |
| KRH73868 | Soybean | cytosol | 50.93 | 50.09 |
| PGSC0003DMT400060553 | Potato | cytosol | 48.88 | 50.0 |
| KRH14274 | Soybean | cytosol | 50.75 | 49.91 |
| KRH11548 | Soybean | nucleus | 50.37 | 48.91 |
| PGSC0003DMT400034763 | Potato | cytosol | 48.69 | 48.88 |
| KRH46306 | Soybean | cytosol | 49.63 | 48.81 |
| KRH01979 | Soybean | cytosol | 49.63 | 48.81 |
| KRG98562 | Soybean | nucleus | 49.63 | 48.81 |
| KRH51175 | Soybean | cytosol | 49.07 | 48.52 |
| KRH36572 | Soybean | cytosol | 49.25 | 48.18 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 48.51 | 47.97 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 48.88 | 47.38 |
| Bra021063.1-P | Field mustard | plastid | 46.83 | 47.36 |
| CDY58168 | Canola | plastid | 46.83 | 47.36 |
| CDY50128 | Canola | cytosol, plastid | 46.46 | 46.72 |
| CDY35589 | Canola | cytosol | 46.27 | 46.7 |
| AT4G17230.1 | Thale cress | cytosol | 46.08 | 46.69 |
| PGSC0003DMT400021748 | Potato | nucleus | 48.69 | 46.69 |
| CDY42968 | Canola | cytosol | 46.27 | 46.36 |
| Bra026237.1-P | Field mustard | plastid | 46.08 | 46.17 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 50.75 | 45.26 |
| KRH38269 | Soybean | cytosol | 28.17 | 42.78 |
| HORVU2Hr1G043780.1 | Barley | cytosol | 44.59 | 41.93 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 38.43 | 37.32 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.27 | 34.23 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 20.9 | 24.56 |
| HORVU4Hr1G080460.5 | Barley | cytosol | 22.76 | 20.96 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 14.37 | 20.0 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 23.51 | 19.57 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 21.64 | 19.46 |
| HORVU4Hr1G027900.1 | Barley | cytosol | 23.32 | 18.88 |
| HORVU4Hr1G027610.1 | Barley | cytosol | 23.69 | 18.76 |
| HORVU4Hr1G027480.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 24.63 | 18.67 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 24.81 | 18.5 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 25.56 | 18.39 |
| HORVU4Hr1G027520.2 | Barley | cytosol, peroxisome | 22.2 | 18.22 |
| HORVU4Hr1G027920.1 | Barley | peroxisome | 23.88 | 16.14 |
| HORVU3Hr1G086210.1 | Barley | cytosol, nucleus, plasma membrane | 23.69 | 16.06 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 23.32 | 15.88 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G071670.1 | EnsemblPlantsGene:HORVU4Hr1G071670 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000294F1E2 |
| UniProt:M0VAZ0 | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:581608907..581617896
Molecular Weight (calculated)
59439.0 Da
IEP (calculated)
6.225
GRAVY (calculated)
-0.296
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKASNMSY RYPDNSQIPY YSSSMHVGGN GACYVQQNHE DHQYMSSDGG SQNSDSKSQV IHPQYCTLES SSANCVYAAH SSTSPQCISG SHISLHDSHS
101: DHTYDSPASG ITEVPGLGFT NLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN CHEDLLISEL QKMVSVSGEP
201: IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM SYMHLLYDIC PFFKFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARASG
301: PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFSRY METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS RFAMAGFRPY PLSALVNNTI
501: RALLNGYNSY YKLEEKDGVI YLGWKNRKLV VSSAWR
101: DHTYDSPASG ITEVPGLGFT NLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN CHEDLLISEL QKMVSVSGEP
201: IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM SYMHLLYDIC PFFKFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARASG
301: PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR KGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR
401: VVTLVEQEAN TNTAPFFSRY METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS RFAMAGFRPY PLSALVNNTI
501: RALLNGYNSY YKLEEKDGVI YLGWKNRKLV VSSAWR
001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]
SUBAcon: [mitochondrion,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.