Factsheet for VIT_19s0090g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00560.t01	Wine grape	cytosol	74.5	74.5
GSMUA_Achr4P07010_001	Banana	cytosol	43.85	72.87
Bra026077.1-P	Field mustard	cytosol	38.9	72.11
CDY22807	Canola	nucleus	50.28	65.24
CDY37124	Canola	nucleus	50.28	65.24
CDY71156	Canola	cytosol, plastid	46.61	65.13
KRG98562	Soybean	nucleus	63.67	63.67
GSMUA_AchrUn_...	Banana	nucleus	49.91	63.55
GSMUA_Achr4P11050_001	Banana	nucleus	46.24	63.48
Solyc07g065270.1.1	Tomato	nucleus	62.39	63.2
PGSC0003DMT400057111	Potato	nucleus	62.02	62.94
CDY07309	Canola	cytosol	27.71	62.92
KRH14274	Soybean	cytosol	62.75	62.75
KRH46306	Soybean	cytosol	62.57	62.57
Bra018860.1-P	Field mustard	nucleus	60.18	62.48
KRH73868	Soybean	cytosol	62.39	62.39
TraesCS5A01G414000.1	Wheat	cytosol	48.26	61.74
VIT_00s0463g00020.t01	Wine grape	nucleus	61.1	61.1
TraesCS5A01G409800.1	Wheat	nucleus, plastid	55.41	60.28
Os07t0583600-01	Rice	plasma membrane	57.98	58.09
KRH38269	Soybean	cytosol	37.06	57.22
TraesCS2B01G217500.1	Wheat	cytosol	58.17	57.22
Zm00001d030500_P001	Maize	nucleus	56.33	56.64
HORVU2Hr1G036280.1	Barley	cytosol	57.61	56.37
TraesCS5D01G419400.2	Wheat	cytosol	56.88	56.36
TraesCS2A01G189600.1	Wheat	cytosol	57.25	56.32
TraesCS2D01G198200.1	Wheat	cytosol	57.25	56.22
EER97449	Sorghum	cytosol	56.33	56.12
Zm00001d006701_P001	Maize	cytosol	56.33	55.42
Os03t0193000-01	Rice	plastid	53.95	54.95
AT1G50600.2	Thale cress	golgi, mitochondrion	60.55	54.91
Zm00001d048199_P001	Maize	mitochondrion, nucleus	53.95	54.85
Zm00001d021946_P001	Maize	cytosol	55.96	54.66
TraesCS4D01G266400.1	Wheat	cytosol	53.39	54.29
HORVU4Hr1G071670.1	Barley	cytosol	53.21	54.1
TraesCS4B01G266700.1	Wheat	cytosol	53.21	54.0
TraesCS4A01G039000.1	Wheat	nucleus	48.26	53.78
EER95348	Sorghum	cytosol	52.48	53.36
HORVU5Hr1G099160.1	Barley	plastid	56.33	48.73
VIT_19s0014g04940.t01	Wine grape	cytosol	49.17	45.97
VIT_04s0044g01370.t01	Wine grape	nucleus	44.4	42.61
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	42.57	41.06
VIT_06s0004g04990.t01	Wine grape	cytosol	25.14	31.0
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	29.36	27.16
VIT_13s0019g01780.t01	Wine grape	nucleus	27.89	25.33
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	29.91	22.99
VIT_13s0019g01710.t01	Wine grape	cytosol	30.46	22.83
VIT_06s0004g04950.t01	Wine grape	cytosol	30.28	21.88
VIT_13s0019g01790.t01	Wine grape	cytosol	28.81	21.84
VIT_13s0019g01810.t01	Wine grape	cytosol	29.72	21.66
VIT_06s0004g04970.t01	Wine grape	cytosol	25.69	21.28
VIT_13s0019g01700.t01	Wine grape	cytosol	29.54	21.18
VIT_06s0004g04980.t01	Wine grape	nucleus	26.05	20.17
VIT_06s0004g04960.t01	Wine grape	nucleus	28.81	19.7

Protein Annotations

EntrezGene:100250258	wikigene:100250258	MapMan:15.5.12	EMBL:AM435049	ProteinID:CAN78295	ProteinID:CAN78295.1
ProteinID:CCB50728	ProteinID:CCB50728.1	UniProt:F6HER6	EMBL:FN595751	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
EntrezGene:LOC100250258	wikigene:LOC100250258	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF57
InterPro:TF_GRAS	UniParc:UPI00019855DB	ArrayExpress:VIT_19s0090g01740	EnsemblPlantsGene:VIT_19s0090g01740	EnsemblPlants:VIT_19s0090g01740.t01	unigene:Vvi.6554
RefSeq:XP_002274103	RefSeq:XP_002274103.1	RefSeq:XP_010644523.1	:	:	:

Description

No Description!

Coordinates

chr19:-:7772047..7775246

Molecular Weight (calculated)

60381.5 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.299

Length

545 amino acids

Sequence
(BLAST)

001: MQASQKHGIS GRSGSFYSQP VPQDESCQWP ILNIEHHSCS DDGSQGMHFS GPTYCEQYGT HESSSATGSF PIYNSPSTVS FSPEGSPASQ QDSQTYPSDQ
101: LHSPENGHGS PISGSCLTDD VNELRHKLRE LETAMLGPDS DILDVHEVIP RELNKISLER EKWKQMMEVI SRGDLKEVLV SCAKAVADND ILRAEWGISE
201: LRQMVSVSGE PIQRLGAYML EGLVARLAAS GSSIYKALRC KEPASAELLS YMHLLFEICP YFKFGHMSGN GAIAEAMKDE SKVHIIDFQI SQGVQWITLI
301: QALAARPGGP PQIRITGIDD STSAYARGGG PSIVGQRLSR FAESCKVPFE FHAATISGCE VQLEDLELRP GEALAVNFAF ILHHMPDESV DTQNHRDRLL
401: RLVKSLSPKV VTLVEQESNT NTAPFLSRFI EAMNYYLAVF ESIDVTLPRD HKERINAEQH CLAREIVNII ACEGAERVER HELLGKWKSR FLMAGFTPHP
501: LSSYVNATIK TLLQNYSDKY SLEEKDGALY LGWMDRALVA ACAWS

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.