Factsheet for VIT_12s0057g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14104	Soybean	cytosol	82.94	82.94
KRH74015	Soybean	cytosol	82.02	82.62
PGSC0003DMT400015696	Potato	cytosol	74.68	76.07
Solyc07g047950.1.1	Tomato	mitochondrion	75.41	75.41
GSMUA_Achr4P07010_001	Banana	cytosol	45.32	75.3
VIT_19s0090g01740.t01	Wine grape	cytosol	74.5	74.5
AT5G48150.4	Thale cress	cytosol	66.24	73.67
CDX86324	Canola	cytosol, nucleus, plastid	65.5	71.83
CDY19966	Canola	cytosol	64.22	70.85
Bra020715.1-P	Field mustard	cytosol, plastid	64.59	70.83
CDY54511	Canola	cytosol, nucleus, plastid	64.59	70.83
CDY71174	Canola	cytosol, plastid	64.59	70.83
CDY05700	Canola	cytosol, plastid	64.4	70.62
Bra036185.1-P	Field mustard	cytosol	64.04	70.51
CDY00074	Canola	cytosol, plastid	64.22	70.42
GSMUA_Achr4P11050_001	Banana	nucleus	49.54	68.01
GSMUA_AchrUn_...	Banana	nucleus	51.93	66.12
VIT_00s0463g00020.t01	Wine grape	nucleus	64.22	64.22
TraesCS5A01G414000.1	Wheat	cytosol	48.99	62.68
TraesCS5A01G409800.1	Wheat	nucleus, plastid	57.06	62.08
Os03t0193000-01	Rice	plastid	57.8	58.88
Zm00001d030500_P001	Maize	nucleus	58.53	58.86
TraesCS5D01G419400.2	Wheat	cytosol	59.27	58.73
Zm00001d048199_P001	Maize	mitochondrion, nucleus	57.43	58.4
TraesCS2B01G217500.1	Wheat	cytosol	59.27	58.3
EER95348	Sorghum	cytosol	57.25	58.21
Os07t0583600-01	Rice	plasma membrane	57.98	58.09
HORVU2Hr1G036280.1	Barley	cytosol	59.08	57.81
HORVU4Hr1G071670.1	Barley	cytosol	56.7	57.65
TraesCS2A01G189600.1	Wheat	cytosol	58.53	57.58
TraesCS2D01G198200.1	Wheat	cytosol	58.53	57.48
TraesCS4D01G266400.1	Wheat	cytosol	56.15	57.09
EER97449	Sorghum	cytosol	56.88	56.67
TraesCS4A01G039000.1	Wheat	nucleus	50.83	56.65
TraesCS4B01G266700.1	Wheat	cytosol	55.6	56.42
Zm00001d006701_P001	Maize	cytosol	57.06	56.14
Zm00001d021946_P001	Maize	cytosol	56.88	55.56
HORVU5Hr1G099160.1	Barley	plastid	59.08	51.11
VIT_19s0014g04940.t01	Wine grape	cytosol	48.99	45.8
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	44.04	42.48
VIT_04s0044g01370.t01	Wine grape	nucleus	44.22	42.43
VIT_06s0004g04990.t01	Wine grape	cytosol	24.4	30.09
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	30.28	28.01
VIT_13s0019g01780.t01	Wine grape	nucleus	26.05	23.67
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	28.62	22.0
VIT_13s0019g01710.t01	Wine grape	cytosol	28.81	21.6
VIT_06s0004g04950.t01	Wine grape	cytosol	29.17	21.09
VIT_13s0019g01790.t01	Wine grape	cytosol	27.34	20.72
VIT_06s0004g04970.t01	Wine grape	cytosol	24.59	20.36
VIT_13s0019g01810.t01	Wine grape	cytosol	27.89	20.32
VIT_13s0019g01700.t01	Wine grape	cytosol	27.89	20.0
VIT_06s0004g04980.t01	Wine grape	nucleus	25.5	19.74
VIT_06s0004g04960.t01	Wine grape	nucleus	27.34	18.7

Protein Annotations

EntrezGene:100261403	wikigene:100261403	MapMan:15.5.12	ProteinID:CCB51715	ProteinID:CCB51715.1	ncoils:Coil
UniProt:F6HHL9	EMBL:FN595759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100261403	wikigene:LOC100261403
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	TIGR:TC62974	InterPro:TF_GRAS
UniParc:UPI000198451B	ArrayExpress:VIT_12s0057g00560	EnsemblPlantsGene:VIT_12s0057g00560	EnsemblPlants:VIT_12s0057g00560.t01	unigene:Vvi.11831	RefSeq:XP_002272334
RefSeq:XP_002272334.1	RefSeq:XP_010657429.1	RefSeq:XP_010657430.1	RefSeq:XP_019079174.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:9123111..9124990

Molecular Weight (calculated)

60866.9 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.347

Length

545 amino acids

Sequence
(BLAST)

001: MQASQQHRSS GMSNRLYYLP PQEAEAHCLP QFQSFDHQLC YNDGSQGTNF SFQGSSERYC TLESSSATGS YAIYNSPSTV SFSPNGSPNS QQDSQSYPSD
101: PHHSPDNTYG SPMSASCITD DVSDLKHKLR ELETVMLGPD SDIINSYDST FTPNKSSLEM DSWRDTMEMI SGGDLKQILV ACAKSVSDND LLMAQWLMDE
201: LRQMVSVSGE PIQRLGAYML EGLVARLASS GSSIYKALRC KEPASADLLS YMHILYEVCP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI GQGSQWITLI
301: QAFSARPGGP PHIRITGIDD STSAYARGGG LNIVGQRLSR LAESVKVPFE FHAADMSGCE VQLENLGARP GEALAVNFAF MLHHMPDESV STQNHRDRLL
401: RLVKSLSPKV VTLVEQESNT NTAAFFPRFL ETLNYYTAMF ESIDVTLPRE HKKRISVEQH CLARDVVNII ACEGVERVER HELLGKWRLR FAMAGFTPYP
501: LSSLVNATIK RLLENYSDKY RLEEREGALY LGWMDRDLVA SCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.