CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020715.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY05700	Canola	cytosol, plastid	98.59	98.59
CDX86324	Canola	cytosol, nucleus, plastid	90.95	90.95
CDY54511	Canola	cytosol, nucleus, plastid	89.74	89.74
AT5G48150.4	Thale cress	cytosol	88.13	89.39
CDY00074	Canola	cytosol, plastid	88.93	88.93
CDY19966	Canola	cytosol	88.13	88.66
CDY00883	Canola	cytosol	55.33	67.9
GSMUA_Achr4P07010_001	Banana	cytosol	44.27	67.07
VIT_12s0057g00560.t01	Wine grape	cytosol	70.83	64.59
PGSC0003DMT400015696	Potato	cytosol	68.81	63.93
KRH74015	Soybean	cytosol	69.01	63.4
KRH14104	Soybean	cytosol	69.01	62.94
Solyc07g047950.1.1	Tomato	mitochondrion	68.41	62.39
CDY71156	Canola	cytosol, plastid	47.89	61.03
CDY07309	Canola	cytosol	29.18	60.42
TraesCS5A01G414000.1	Wheat	cytosol	50.7	59.15
CDY37124	Canola	nucleus	49.09	58.1
CDY22807	Canola	nucleus	48.89	57.86
GSMUA_Achr4P11050_001	Banana	nucleus	44.67	55.92
GSMUA_AchrUn_...	Banana	nucleus	46.88	54.44
TraesCS5A01G409800.1	Wheat	nucleus, plastid	54.53	54.09
Zm00001d048199_P001	Maize	mitochondrion, nucleus	55.53	51.49
Zm00001d030500_P001	Maize	nucleus	56.14	51.48
Os07t0583600-01	Rice	plasma membrane	55.94	51.1
Os03t0193000-01	Rice	plastid	54.93	51.03
EER95348	Sorghum	cytosol	54.73	50.75
HORVU4Hr1G071670.1	Barley	cytosol	54.12	50.19
TraesCS5D01G419400.2	Wheat	cytosol	55.33	50.0
HORVU2Hr1G036280.1	Barley	cytosol	55.94	49.91
TraesCS2B01G217500.1	Wheat	cytosol	55.53	49.82
TraesCS2A01G189600.1	Wheat	cytosol	55.53	49.82
TraesCS4D01G266400.1	Wheat	cytosol	53.72	49.81
TraesCS2D01G198200.1	Wheat	cytosol	55.33	49.55
Zm00001d021946_P001	Maize	cytosol	55.13	49.1
Zm00001d006701_P001	Maize	cytosol	54.73	49.1
EER97449	Sorghum	cytosol	53.92	48.99
TraesCS4B01G266700.1	Wheat	cytosol	52.92	48.98
TraesCS4A01G039000.1	Wheat	nucleus	47.48	48.26
CDY35589	Canola	cytosol	46.68	43.69
HORVU5Hr1G099160.1	Barley	plastid	55.33	43.65
CDY50128	Canola	cytosol, plastid	46.68	43.53
CDY58168	Canola	plastid	46.28	43.4
CDY42968	Canola	cytosol	46.48	43.18
CDY00377	Canola	cytosol	42.05	38.0
CDY61060	Canola	cytosol	40.44	37.29
CDY68224	Canola	cytosol	42.45	36.63
CDY50240	Canola	cytosol	42.45	36.63
CDY27821	Canola	cytosol	28.57	31.98
CDY00533	Canola	cytosol	28.17	31.39
CDX80265	Canola	endoplasmic reticulum, golgi	19.92	31.23
CDX68389	Canola	cytosol	5.03	29.41
CDY27063	Canola	cytosol, plastid	28.97	25.0
CDX91655	Canola	cytosol	28.97	24.49
CDY71578	Canola	nucleus, plastid	25.15	23.99
CDY47877	Canola	nucleus	26.36	21.2
CDY33040	Canola	nucleus	25.15	20.94
CDY39530	Canola	cytosol	25.96	20.84
CDY47878	Canola	nucleus	27.36	19.68
CDX82987	Canola	nucleus	23.74	19.63
CDY06266	Canola	cytosol	24.35	19.15
CDX79750	Canola	peroxisome	25.55	18.84
CDX86475	Canola	nucleus	26.76	18.73
CDY07777	Canola	cytosol, nucleus, peroxisome	25.35	18.72
CDX68388	Canola	cytosol	15.49	18.6
CDY31749	Canola	cytosol	26.76	18.32
CDX77228	Canola	cytosol	24.75	18.3
CDY06265	Canola	cytosol	24.75	17.83
CDY09912	Canola	cytosol	24.35	17.29
CDY15616	Canola	nucleus	24.75	17.2
CDY09911	Canola	nucleus	17.3	14.73

Protein Annotations

EnsemblPlants:CDY71174	EnsemblPlantsGene:GSBRNA2T00011921001	GO:A0A078JWP7	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY71174	ProteinID:CDY71174.1
SEG:seg	UniParc:UPI000254614E	UniProt:A0A078JWP7	MapMan:15.5.12	:	:

Description

BnaAnng36390DBnaAnng36390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWP7]

Coordinates

chrLK044780:+:323..2666

Molecular Weight (calculated)

55849.4 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.355

Length

497 amino acids

Sequence
(BLAST)

001: MYKHPRQEIE AYSLPANSVG KRRYVPVHNS RKRYCTPESS SPDSPAYDVL SNATALVSHN NSAYEDTSGS CVTDDFNDKI KELETVMMGP DSLDLVLDYN
101: DSFDSTSCQE TNTWRSTLEA VSRRDLRADL VSCAKAMSEN DLMMARSMME KLRLMVSVSG EPIERLGAYL LEGLVAQLSS SGSSIYKSLN QCPEPASTDL
201: LSYMHILYEV CPYFKFGYMS ANGAIAEAMK EENRVHIIDF QIGQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLNIVGNRL AKLAKQFNVP
301: FEFNSVSVSV SEVRPKNLGV RPGEALAVNF AFVLHHMPDE SVSTENHRDR LLRMVKSLSP KVVTLVEQES NTNTAAFFPR FKETMDYYDA MFESIDVTLP
401: RNHKQRINVE QHCLARDVVN IIACEGADRV ERHELLGKWR SRFGMAGFTP YPLSPLVNST IRSLLRNYSD KYRLEERDGA LYLGWMRRDL VASCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.