Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82987 | Canola | nucleus | 93.0 | 64.06 |
| AT3G46600.1 | Thale cress | cytosol | 79.95 | 56.78 |
| CDY33040 | Canola | nucleus | 60.39 | 41.88 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 31.16 | 40.69 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 33.09 | 31.0 |
| CDY07309 | Canola | cytosol | 17.15 | 29.58 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 27.78 | 27.84 |
| Solyc01g100200.2.1 | Tomato | nucleus | 43.24 | 26.88 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 41.55 | 26.63 |
| KRH10240 | Soybean | cytosol | 37.44 | 25.58 |
| KRH23095 | Soybean | cytosol | 40.58 | 25.57 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 27.78 | 25.22 |
| KRH24773 | Soybean | nucleus | 40.58 | 24.45 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 38.41 | 24.16 |
| Zm00001d034664_P001 | Maize | plastid | 32.61 | 24.15 |
| KRH29771 | Soybean | cytosol | 39.61 | 24.12 |
| CDY71578 | Canola | nucleus, plastid | 30.19 | 23.99 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 34.54 | 23.91 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 40.58 | 23.86 |
| PGSC0003DMT400078286 | Potato | nucleus | 38.16 | 23.69 |
| Solyc06g082530.1.1 | Tomato | cytosol | 37.2 | 23.58 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 35.51 | 23.11 |
| CDY39530 | Canola | cytosol | 34.54 | 23.1 |
| KXG37250 | Sorghum | cytosol | 36.23 | 23.04 |
| GSMUA_Achr10P... | Banana | nucleus | 24.4 | 22.85 |
| CDY47877 | Canola | nucleus | 34.06 | 22.82 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 34.54 | 22.2 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 34.78 | 21.92 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 34.78 | 21.92 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 34.54 | 21.83 |
| CDX86475 | Canola | nucleus | 37.44 | 21.83 |
| GSMUA_Achr10P... | Banana | cytosol | 31.4 | 21.7 |
| CDY06266 | Canola | cytosol | 33.09 | 21.68 |
| Zm00001d035671_P001 | Maize | cytosol | 32.61 | 21.57 |
| Zm00001d011070_P001 | Maize | cytosol | 32.37 | 21.37 |
| KRH23094 | Soybean | cytosol | 28.5 | 21.34 |
| KXG21080 | Sorghum | cytosol | 32.13 | 21.25 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 30.43 | 21.14 |
| KXG38103 | Sorghum | cytosol | 31.88 | 21.09 |
| KXG21079 | Sorghum | cytosol | 31.4 | 20.87 |
| CDX79750 | Canola | peroxisome | 33.57 | 20.62 |
| CDY47878 | Canola | nucleus | 34.3 | 20.55 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 33.33 | 20.51 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 34.3 | 20.17 |
| CDY06265 | Canola | cytosol | 33.57 | 20.14 |
| CDY15616 | Canola | nucleus | 34.54 | 20.0 |
| Os03t0690600-03 | Rice | cytosol | 35.27 | 19.97 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 33.57 | 19.5 |
| CDX77228 | Canola | cytosol | 31.64 | 19.49 |
| OQU92829 | Sorghum | cytosol | 34.3 | 19.35 |
| CDY09912 | Canola | cytosol | 32.61 | 19.29 |
| CDY00883 | Canola | cytosol | 18.84 | 19.26 |
| CDY31749 | Canola | cytosol | 33.57 | 19.15 |
| Zm00001d028603_P001 | Maize | cytosol | 33.82 | 19.07 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.09 | 19.05 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.92 | 18.93 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 31.88 | 18.83 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 32.85 | 18.81 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 27.54 | 18.63 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 30.92 | 18.55 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 32.13 | 18.45 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 31.16 | 18.27 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 31.88 | 18.21 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 33.09 | 18.1 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 31.64 | 17.97 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 16.91 | 17.86 |
| Zm00001d033166_P001 | Maize | nucleus | 31.4 | 17.76 |
| KXG38064 | Sorghum | nucleus | 30.68 | 17.64 |
| OQU91407 | Sorghum | nucleus | 29.23 | 17.64 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 30.43 | 17.62 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 30.19 | 17.46 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 30.68 | 17.45 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 32.61 | 17.4 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 32.37 | 17.31 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 32.85 | 17.28 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 32.37 | 17.27 |
| Zm00001d035670_P001 | Maize | cytosol | 30.19 | 17.22 |
| EER91260 | Sorghum | nucleus | 29.95 | 17.2 |
| EES18882 | Sorghum | cytosol | 30.19 | 17.05 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 29.71 | 17.04 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 29.47 | 16.92 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 29.47 | 16.9 |
| Zm00001d047813_P002 | Maize | nucleus | 33.82 | 16.89 |
| OQU91406 | Sorghum | nucleus | 30.43 | 16.84 |
| EES18880 | Sorghum | cytosol | 28.74 | 16.06 |
| CDY19966 | Canola | cytosol | 19.08 | 15.99 |
| CDY71156 | Canola | cytosol, plastid | 14.98 | 15.9 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 19.08 | 15.9 |
| CDY00074 | Canola | cytosol, plastid | 19.08 | 15.9 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 19.08 | 15.9 |
| CDY58168 | Canola | plastid | 20.29 | 15.85 |
| CDY35589 | Canola | cytosol | 20.05 | 15.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.88 | 15.63 |
| CDY50128 | Canola | cytosol, plastid | 20.05 | 15.57 |
| CDY42968 | Canola | cytosol | 20.05 | 15.51 |
| CDY05700 | Canola | cytosol, plastid | 18.6 | 15.49 |
| CDY71174 | Canola | cytosol, plastid | 18.6 | 15.49 |
| CDY22807 | Canola | nucleus | 15.7 | 15.48 |
| CDY37124 | Canola | nucleus | 15.7 | 15.48 |
| CDY09911 | Canola | nucleus | 20.77 | 14.73 |
| CDY00533 | Canola | cytosol | 15.22 | 14.13 |
| CDY27821 | Canola | cytosol | 14.73 | 13.74 |
| CDY00377 | Canola | cytosol | 17.63 | 13.27 |
| CDY61060 | Canola | cytosol | 16.43 | 12.62 |
| CDY27063 | Canola | cytosol, plastid | 17.15 | 12.33 |
| CDY68224 | Canola | cytosol | 15.94 | 11.46 |
| CDY50240 | Canola | cytosol | 15.7 | 11.28 |
| CDX91655 | Canola | cytosol | 15.46 | 10.88 |
| CDX68389 | Canola | cytosol | 0.24 | 1.18 |
Protein Annotations
| EnsemblPlants:CDX68388 | EnsemblPlantsGene:GSBRNA2T00125763001 | GO:A0A078BZT9 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF56 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX68388 | ProteinID:CDX68388.1 | SEG:seg |
| UniParc:UPI0004EF27E8 | MapMan:15.5.12 | : | : | : | : |
Description
BnaC01g24660D
Coordinates
chrLK031788:+:663089..664635
Molecular Weight (calculated)
46315.9 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.473
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSRFTCFKE SESQNLSSPT ESTESHNPSP TESTTVWLYK PQRDLSLNPL HQPTSGFTGS PEISEESTRR
101: YRLRDDDGHE EDDLEGGRKS KLPAISVVDE LAEKLEEVLL VCQKNDHGEA TPNKIGRAKG SLNRSKPQKS DQPVDMRNLL MQCAQAVASF DQSRAFEKLK
201: EIREHSSSHG DATQRLGYHF ANALEARITG TMKTPVTSMV DILKAYKEFV QACPTLAMCY YTANRTIFEL ASKATTLHIV DFGILYGFQW PCLIQALAAR
301: PGGPPKLRVT GIELPQPGFR PSERVEETGR RLKRFCDKFS VPFEYNFIAK AWDTITLDEL VINSGETTVV NCILRLQYTP DETVSLNSPR DTALKLCRDI
401: NPDLFVYVPL LLPL
101: YRLRDDDGHE EDDLEGGRKS KLPAISVVDE LAEKLEEVLL VCQKNDHGEA TPNKIGRAKG SLNRSKPQKS DQPVDMRNLL MQCAQAVASF DQSRAFEKLK
201: EIREHSSSHG DATQRLGYHF ANALEARITG TMKTPVTSMV DILKAYKEFV QACPTLAMCY YTANRTIFEL ASKATTLHIV DFGILYGFQW PCLIQALAAR
301: PGGPPKLRVT GIELPQPGFR PSERVEETGR RLKRFCDKFS VPFEYNFIAK AWDTITLDEL VINSGETTVV NCILRLQYTP DETVSLNSPR DTALKLCRDI
401: NPDLFVYVPL LLPL
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.