Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58168 | Canola | plastid | 97.0 | 97.55 |
| CDY35589 | Canola | cytosol | 88.93 | 89.27 |
| CDY42968 | Canola | cytosol | 88.93 | 88.6 |
| AT4G17230.1 | Thale cress | cytosol | 86.49 | 87.15 |
| KRH36572 | Soybean | cytosol | 60.23 | 58.58 |
| KRH51175 | Soybean | cytosol | 59.47 | 58.49 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 59.66 | 58.35 |
| KRH01979 | Soybean | cytosol | 59.29 | 57.98 |
| KRH11548 | Soybean | nucleus | 59.85 | 57.79 |
| PGSC0003DMT400034763 | Potato | cytosol | 55.72 | 55.62 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 56.47 | 55.54 |
| PGSC0003DMT400060553 | Potato | cytosol | 53.47 | 54.39 |
| PGSC0003DMT400021748 | Potato | nucleus | 56.1 | 53.49 |
| CDY07309 | Canola | cytosol | 23.64 | 52.5 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 32.27 | 52.44 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 54.22 | 52.26 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 48.78 | 51.9 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 40.71 | 50.94 |
| CDY37124 | Canola | nucleus | 39.21 | 49.76 |
| CDY22807 | Canola | nucleus | 39.21 | 49.76 |
| CDY71156 | Canola | cytosol, plastid | 36.4 | 49.74 |
| CDY00883 | Canola | cytosol | 37.34 | 49.14 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 49.34 | 47.82 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 43.53 | 47.44 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 44.09 | 47.28 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 43.9 | 47.08 |
| CDY19966 | Canola | cytosol | 43.53 | 46.96 |
| Zm00001d006701_P001 | Maize | cytosol | 48.78 | 46.93 |
| Os03t0193000-01 | Rice | plastid | 47.09 | 46.92 |
| CDY00074 | Canola | cytosol, plastid | 43.71 | 46.88 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 48.59 | 46.75 |
| Os07t0583600-01 | Rice | plasma membrane | 47.65 | 46.69 |
| CDY71174 | Canola | cytosol, plastid | 43.53 | 46.68 |
| EER95348 | Sorghum | cytosol | 46.9 | 46.64 |
| EER97449 | Sorghum | cytosol | 47.84 | 46.62 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 48.41 | 46.49 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 46.72 | 46.46 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 34.52 | 46.35 |
| CDY05700 | Canola | cytosol, plastid | 43.15 | 46.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.15 | 46.26 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 48.03 | 46.21 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 48.22 | 46.14 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 46.34 | 46.08 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 46.34 | 46.08 |
| Zm00001d021946_P001 | Maize | cytosol | 48.22 | 46.06 |
| Zm00001d030500_P001 | Maize | nucleus | 46.53 | 45.76 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 45.78 | 45.44 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 26.45 | 42.34 |
| HORVU5Hr1G099160.1 | Barley | plastid | 48.03 | 40.63 |
| CDY61060 | Canola | cytosol | 37.34 | 36.92 |
| CDY00377 | Canola | cytosol | 37.34 | 36.18 |
| CDY68224 | Canola | cytosol | 37.71 | 34.9 |
| CDY50240 | Canola | cytosol | 37.52 | 34.72 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 17.82 | 29.97 |
| CDY27821 | Canola | cytosol | 24.95 | 29.95 |
| CDY00533 | Canola | cytosol | 24.58 | 29.37 |
| CDX68389 | Canola | cytosol | 4.5 | 28.24 |
| CDY27063 | Canola | cytosol, plastid | 26.64 | 24.65 |
| CDX91655 | Canola | cytosol | 25.7 | 23.3 |
| CDY71578 | Canola | nucleus, plastid | 22.7 | 23.22 |
| CDY47877 | Canola | nucleus | 24.77 | 21.36 |
| CDY39530 | Canola | cytosol | 24.77 | 21.32 |
| CDY33040 | Canola | nucleus | 23.64 | 21.11 |
| CDY06266 | Canola | cytosol | 24.39 | 20.57 |
| CDX79750 | Canola | peroxisome | 25.52 | 20.18 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 25.33 | 20.06 |
| CDX68388 | Canola | cytosol | 15.57 | 20.05 |
| CDY47878 | Canola | nucleus | 25.7 | 19.83 |
| CDX82987 | Canola | nucleus | 22.14 | 19.63 |
| CDX86475 | Canola | nucleus | 25.89 | 19.44 |
| CDY15616 | Canola | nucleus | 25.52 | 19.02 |
| CDX77228 | Canola | cytosol | 23.08 | 18.3 |
| CDY31749 | Canola | cytosol | 24.77 | 18.18 |
| CDY06265 | Canola | cytosol | 23.08 | 17.83 |
| CDY09912 | Canola | cytosol | 23.08 | 17.57 |
| CDY09911 | Canola | nucleus | 18.2 | 16.61 |
Protein Annotations
| EnsemblPlants:CDY50128 | EnsemblPlantsGene:GSBRNA2T00095944001 | GO:A0A078IM70 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:Scarecrow-like_13 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF45 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY50128 |
| ProteinID:CDY50128.1 | SEG:seg | UniParc:UPI0004EC7187 | UniProt:A0A078IM70 | MapMan:15.5.12 | : |
Description
BnaCnng18770DBnaCnng18770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM70]
Coordinates
chrLK032883:-:28544..30968
Molecular Weight (calculated)
58809.7 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.290
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNNNNGSSKE SFFTLESSTA SGTTLPSYDS PSSVSITSGR SPFSPQGSHS CISDPHPSPE NVYESPLSAA
101: SSYVYDEAGV KSKIRELEET LLSSDPKVEE YSGFSPAAGK SWNWDELLAL TPQLDLKEVL LEGARAVADG DFATACGFID VLEQMVSVSG SPIQRLGAYM
201: AEGLRARLEG SGGNIYRALK CNEPTGRELM SYMGVLYEIC PYWKFAYMSA NAAILEATAG DNRIHVIDFQ IAQGSQYMFL IHELAKRPGG PPLLRVTGVD
301: DSQSYYARGG GLTLVGEKLA NMAKSCGVPF EFHDAIMSGC EVHREHLGVE PGFAVVVNFP FVLHHMPDES VSVENHRDRL LHLIKSLGPR LVTLVEQESN
401: TNTSPFLSRF VQTLDYYTAM FESIDAARPR DEKQRISAEQ HCVARDIVNM IACEERERVE RHEVLGKWRV RMMMAGFVGW PVGGSAAFAA SEMLKGYDKN
501: YKLGGSEGAL YLFWKRRPMA TCSAWKPNPN QIV
101: SSYVYDEAGV KSKIRELEET LLSSDPKVEE YSGFSPAAGK SWNWDELLAL TPQLDLKEVL LEGARAVADG DFATACGFID VLEQMVSVSG SPIQRLGAYM
201: AEGLRARLEG SGGNIYRALK CNEPTGRELM SYMGVLYEIC PYWKFAYMSA NAAILEATAG DNRIHVIDFQ IAQGSQYMFL IHELAKRPGG PPLLRVTGVD
301: DSQSYYARGG GLTLVGEKLA NMAKSCGVPF EFHDAIMSGC EVHREHLGVE PGFAVVVNFP FVLHHMPDES VSVENHRDRL LHLIKSLGPR LVTLVEQESN
401: TNTSPFLSRF VQTLDYYTAM FESIDAARPR DEKQRISAEQ HCVARDIVNM IACEERERVE RHEVLGKWRV RMMMAGFVGW PVGGSAAFAA SEMLKGYDKN
501: YKLGGSEGAL YLFWKRRPMA TCSAWKPNPN QIV
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
Arabidopsis Description
SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.