CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61060	Canola	cytosol	91.82	93.69
CDY68224	Canola	cytosol	87.09	83.16
CDY50240	Canola	cytosol	86.73	82.81
AT1G21450.1	Thale cress	nucleus	86.0	79.76
GSMUA_Achr6P11780_001	Banana	cytosol	42.73	68.71
KRH15917	Soybean	cytosol	62.73	58.38
KRH18097	Soybean	cytosol	62.55	58.21
KRH64568	Soybean	cytosol	62.36	57.55
KRH53364	Soybean	cytosol	62.0	56.83
VIT_04s0044g01370.t01	Wine grape	nucleus	58.36	56.51
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	56.55	55.64
GSMUA_Achr10P...	Banana	cytosol	55.82	55.62
Solyc04g064550.1.1	Tomato	mitochondrion	56.91	55.59
GSMUA_Achr3P02410_001	Banana	nucleus	54.91	51.45
Os01t0881500-01	Rice	cytosol	51.09	50.81
HORVU3Hr1G091250.1	Barley	cytosol	50.73	50.54
TraesCS3D01G403100.1	Wheat	cytosol	50.55	50.36
TraesCS3B01G441600.1	Wheat	cytosol	50.55	50.36
TraesCS3A01G408000.1	Wheat	cytosol	50.55	50.36
KXG33821	Sorghum	cytosol	51.64	49.91
EES18257	Sorghum	cytosol	50.18	49.02
Zm00001d038225_P001	Maize	cytosol	49.09	48.13
CDY00883	Canola	cytosol	34.18	46.42
CDY71156	Canola	cytosol, plastid	31.45	44.36
CDY07309	Canola	cytosol	19.27	44.17
CDY22807	Canola	nucleus	32.73	42.86
CDY37124	Canola	nucleus	32.73	42.86
CDY19966	Canola	cytosol	38.18	42.51
CDY00074	Canola	cytosol, plastid	38.18	42.25
CDX86324	Canola	cytosol, nucleus, plastid	38.18	42.25
CDY71174	Canola	cytosol, plastid	38.0	42.05
CDY05700	Canola	cytosol, plastid	38.0	42.05
CDY54511	Canola	cytosol, nucleus, plastid	38.0	42.05
CDY35589	Canola	cytosol	37.64	38.98
CDY42968	Canola	cytosol	37.45	38.5
CDY58168	Canola	plastid	36.36	37.74
CDY50128	Canola	cytosol, plastid	36.18	37.34
CDY27821	Canola	cytosol	28.0	34.68
CDY00533	Canola	cytosol	28.0	34.53
CDX80265	Canola	endoplasmic reticulum, golgi	15.82	27.44
CDY27063	Canola	cytosol, plastid	28.18	26.91
CDX91655	Canola	cytosol	28.18	26.36
CDX68389	Canola	cytosol	4.0	25.88
CDY71578	Canola	nucleus, plastid	19.64	20.73
CDY47877	Canola	nucleus	23.09	20.55
CDY39530	Canola	cytosol	22.91	20.36
CDY33040	Canola	nucleus	21.45	19.77
CDY06266	Canola	cytosol	22.36	19.46
CDX82987	Canola	nucleus	20.55	18.8
CDX79750	Canola	peroxisome	22.55	18.4
CDX86475	Canola	nucleus	23.64	18.31
CDY07777	Canola	cytosol, nucleus, peroxisome	22.36	18.28
CDY47878	Canola	nucleus	22.55	17.95
CDX68388	Canola	cytosol	13.27	17.63
CDY09912	Canola	cytosol	22.18	17.43
CDX77228	Canola	cytosol	21.27	17.41
CDY06265	Canola	cytosol	21.82	17.39
CDY31749	Canola	cytosol	22.91	17.36
CDY15616	Canola	nucleus	22.18	17.06
CDY09911	Canola	nucleus	16.73	15.75

Protein Annotations

EnsemblPlants:CDY00377	EnsemblPlantsGene:GSBRNA2T00109996001	GO:A0A078EGY2	InterPro:IPR005202	InterPro:Scarecrow-like_1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY00377	ProteinID:CDY00377.1
SEG:seg	UniParc:UPI0004EF0530	MapMan:15.5.12	:	:	:

Description

BnaC07g14490D

Coordinates

chrLK031918:+:359740..361973

Molecular Weight (calculated)

61274.6 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.363

Length

550 amino acids

Sequence
(BLAST)

001: MVEQTARVMS LVRSAEPSAA AYRNPKLYSP NENGYNSGGG ASVEIFDPDR SKNTCLTHDN SYPSQSYFLD SPTEQHPVAC GAASVSSFGS LDSSPYQSRP
101: VLGSSMEFDD EQMRSKIQEL ERALLSDEDD DIMEGLDHLM EIDNEWSYQN HSSKDSSSAD SNSQASSTKE VVSQAKTPKQ ILISCARALS EGKSEEALSM
201: LNELRQIVSI QGDPSQRIAA YMVEGLAARM AASGTFLYRA LKCKEPPSDE RLAAMQVLFE ACPCFKFGLL AANGAIVESI RDEKEVHIID FDINQGNQYM
301: TLIRTIAELP GKGPRLRLTG IDDPESVQRS VGGLRIIGLR LEQLAKDHGV SFKFKAVASK TSLIVSPSTL GCKPGEALIV NFAFQLHHMP DESVTIVNQR
401: DELLHMVKGL NPKLVTVVEQ DVNTNTSPFF PRFMEAYEYY SAVFESLDVT LPRESQERMN VERQCLARDI VNVVACEGEE RIERYEVAGK WRARMMMAGF
501: SSRPMSSRVT RSIQSLIKEE YCSKYKVKEE MGELLFCWED KSLIVASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.