Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026077.1-P | Field mustard | cytosol | 57.5 | 46.94 |
| CDY71156 | Canola | cytosol, plastid | 67.5 | 41.54 |
| CDY37124 | Canola | nucleus | 66.67 | 38.1 |
| CDY22807 | Canola | nucleus | 66.67 | 38.1 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 89.58 | 35.77 |
| KRH38269 | Soybean | cytosol | 47.92 | 32.58 |
| CDY00883 | Canola | cytosol | 52.5 | 31.11 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 62.5 | 30.18 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 61.67 | 29.78 |
| CDY00074 | Canola | cytosol, plastid | 61.67 | 29.78 |
| CDY19966 | Canola | cytosol | 61.25 | 29.76 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 52.08 | 29.34 |
| CDY71174 | Canola | cytosol, plastid | 60.42 | 29.18 |
| CDY05700 | Canola | cytosol, plastid | 60.42 | 29.18 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 62.92 | 27.71 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 55.83 | 27.4 |
| KRH73868 | Soybean | cytosol | 61.67 | 27.16 |
| Solyc07g065270.1.1 | Tomato | nucleus | 60.42 | 26.95 |
| PGSC0003DMT400057111 | Potato | nucleus | 60.0 | 26.82 |
| Os07t0583600-01 | Rice | plasma membrane | 60.42 | 26.65 |
| KRH14274 | Soybean | cytosol | 60.42 | 26.61 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 55.0 | 26.35 |
| Zm00001d021946_P001 | Maize | cytosol | 59.58 | 25.63 |
| EER97449 | Sorghum | cytosol | 58.33 | 25.59 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 59.17 | 25.49 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 58.75 | 25.45 |
| Zm00001d006701_P001 | Maize | cytosol | 58.75 | 25.45 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 58.75 | 25.41 |
| KRG98562 | Soybean | nucleus | 57.5 | 25.32 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 58.33 | 25.27 |
| Os03t0193000-01 | Rice | plastid | 56.25 | 25.23 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 56.25 | 25.19 |
| KRH46306 | Soybean | cytosol | 57.08 | 25.14 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 34.17 | 25.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 55.83 | 25.0 |
| Zm00001d030500_P001 | Maize | nucleus | 56.25 | 24.91 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 55.42 | 24.81 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 55.42 | 24.77 |
| EER95348 | Sorghum | cytosol | 54.58 | 24.44 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 55.42 | 24.18 |
| CDY50128 | Canola | cytosol, plastid | 52.5 | 23.64 |
| CDY58168 | Canola | plastid | 52.08 | 23.58 |
| CDY42968 | Canola | cytosol | 52.5 | 23.55 |
| CDY35589 | Canola | cytosol | 52.08 | 23.54 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 35.42 | 21.41 |
| HORVU5Hr1G099160.1 | Barley | plastid | 53.33 | 20.32 |
| CDY61060 | Canola | cytosol | 43.75 | 19.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.58 | 19.39 |
| CDY00377 | Canola | cytosol | 44.17 | 19.27 |
| CDY68224 | Canola | cytosol | 42.5 | 17.71 |
| CDY50240 | Canola | cytosol | 42.08 | 17.53 |
| CDX68388 | Canola | cytosol | 29.58 | 17.15 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 22.5 | 17.03 |
| CDY27821 | Canola | cytosol | 29.58 | 15.99 |
| CDY00533 | Canola | cytosol | 29.58 | 15.92 |
| CDY71578 | Canola | nucleus, plastid | 31.25 | 14.4 |
| CDY33040 | Canola | nucleus | 31.25 | 12.56 |
| CDY27063 | Canola | cytosol, plastid | 30.0 | 12.5 |
| CDX91655 | Canola | cytosol | 29.58 | 12.07 |
| CDY47878 | Canola | nucleus | 34.17 | 11.87 |
| CDX82987 | Canola | nucleus | 29.58 | 11.81 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 32.5 | 11.59 |
| CDX79750 | Canola | peroxisome | 32.08 | 11.42 |
| CDY47877 | Canola | nucleus | 28.33 | 11.0 |
| CDY06266 | Canola | cytosol | 28.75 | 10.92 |
| CDY39530 | Canola | cytosol | 27.92 | 10.82 |
| CDX86475 | Canola | nucleus | 31.67 | 10.7 |
| CDY31749 | Canola | cytosol | 32.08 | 10.61 |
| CDX77228 | Canola | cytosol | 28.75 | 10.27 |
| CDY06265 | Canola | cytosol | 28.75 | 10.0 |
| CDY15616 | Canola | nucleus | 29.17 | 9.79 |
| CDY09912 | Canola | cytosol | 28.33 | 9.71 |
| CDY09911 | Canola | nucleus | 14.58 | 5.99 |
| CDX68389 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY07309 | EnsemblPlantsGene:GSBRNA2T00124210001 | GO:A0A078F2X6 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF57 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY07309 | ProteinID:CDY07309.1 |
| UniParc:UPI0004EDD1A0 | UniProt:A0A078F2X6 | MapMan:15.5.12 | : | : | : |
Description
BnaC05g26710DBnaC05g26710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2X6]
Coordinates
chrLK031977:-:413190..414507
Molecular Weight (calculated)
26477.0 Da
IEP (calculated)
5.949
GRAVY (calculated)
-0.010
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRSMEMISK GDLIGTLYEC AKAVDNHDVA MTDWLISQLQ QMVSVSGEPV QRLGAYMLEG LIAWLASSGS SIYKALRCRD PTGPELLTYL HILYEACPYF
101: KFGYESANGA IAEAVKNERF VHIIDFQISQ GGQWVSLIRA LGARPGGPPR VRITGIDDPR SSFARQGGLE LVGERLGKLA EMYGVPFEFR GAALCCTEVE
201: IEKLGVRNSE ALAVNFPLVL HHMPDESVTN QPLVTSCAWR
101: KFGYESANGA IAEAVKNERF VHIIDFQISQ GGQWVSLIRA LGARPGGPPR VRITGIDDPR SSFARQGGLE LVGERLGKLA EMYGVPFEFR GAALCCTEVE
201: IEKLGVRNSE ALAVNFPLVL HHMPDESVTN QPLVTSCAWR
001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.