Factsheet for HORVU5Hr1G099160.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04890.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT2G04890.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT2G04890.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT2G04890.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT2G04890.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT2G04890.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT2G04890.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT2G04890.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT2G04890.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT2G04890.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT2G04890.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT2G04890.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT2G04890.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT2G04890.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT2G04890.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT2G04890.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G419400.2	Wheat	cytosol	80.95	92.73
TraesCS5A01G409800.1	Wheat	nucleus, plastid	73.49	92.42
TraesCS5A01G414000.1	Wheat	cytosol	57.46	84.98
Zm00001d030500_P001	Maize	nucleus	68.73	79.89
HORVU4Hr1G071670.1	Barley	cytosol	59.52	69.96
GSMUA_Achr4P07010_001	Banana	cytosol	35.56	68.29
Bra015156.1-P	Field mustard	cytosol	32.22	63.84
Bra026077.1-P	Field mustard	cytosol	29.05	62.24
CDY00883	Canola	cytosol	39.05	60.74
GSMUA_Achr4P11050_001	Banana	nucleus	38.25	60.71
AT2G04890.1	Thale cress	cytosol	39.05	59.56
VIT_12s0057g00560.t01	Wine grape	cytosol	51.11	59.08
GSMUA_AchrUn_...	Banana	nucleus	39.84	58.64
Solyc07g047950.1.1	Tomato	mitochondrion	50.32	58.17
PGSC0003DMT400015696	Potato	cytosol	49.21	57.94
KRH74015	Soybean	cytosol	49.52	57.67
KRH14104	Soybean	cytosol	49.84	57.61
VIT_19s0090g01740.t01	Wine grape	cytosol	48.73	56.33
AT5G48150.4	Thale cress	cytosol	43.49	55.92
CDY71156	Canola	cytosol, plastid	34.29	55.38
CDY05700	Canola	cytosol, plastid	43.65	55.33
Bra020715.1-P	Field mustard	cytosol, plastid	43.65	55.33
CDY54511	Canola	cytosol, nucleus, plastid	43.65	55.33
CDX86324	Canola	cytosol, nucleus, plastid	43.65	55.33
CDY71174	Canola	cytosol, plastid	43.65	55.33
CDY19966	Canola	cytosol	42.7	54.45
CDY00074	Canola	cytosol, plastid	42.86	54.33
Bra036185.1-P	Field mustard	cytosol	42.54	54.14
CDY37124	Canola	nucleus	35.71	53.57
CDY22807	Canola	nucleus	35.71	53.57
VIT_00s0463g00020.t01	Wine grape	nucleus	46.19	53.39
CDY07309	Canola	cytosol	20.32	53.33
HORVU2Hr1G036280.1	Barley	cytosol	47.14	53.32
KRH73868	Soybean	cytosol	46.03	53.21
PGSC0003DMT400057111	Potato	nucleus	45.08	52.89
KRH14274	Soybean	cytosol	45.71	52.84
Solyc07g065270.1.1	Tomato	nucleus	45.08	52.79
KRG98562	Soybean	nucleus	45.08	52.11
PGSC0003DMT400034763	Potato	cytosol	43.81	51.69
Bra018860.1-P	Field mustard	nucleus	42.86	51.43
KRH01979	Soybean	cytosol	44.13	51.01
Solyc11g012510.1.1	Tomato	mitochondrion	43.81	50.92
KRH46306	Soybean	cytosol	43.97	50.83
KRH11548	Soybean	nucleus	44.44	50.72
KRH36572	Soybean	cytosol	43.97	50.55
KRH51175	Soybean	cytosol	43.33	50.37
PGSC0003DMT400060553	Potato	cytosol	41.75	50.19
Bra021063.1-P	Field mustard	plastid	40.95	48.68
CDY58168	Canola	plastid	40.95	48.68
AT4G17230.1	Thale cress	cytosol	40.63	48.39
CDY35589	Canola	cytosol	40.63	48.21
CDY50128	Canola	cytosol, plastid	40.63	48.03
Solyc04g014830.1.1	Tomato	mitochondrion	41.9	47.74
Bra026237.1-P	Field mustard	plastid	40.48	47.66
CDY42968	Canola	cytosol	40.48	47.66
PGSC0003DMT400021748	Potato	nucleus	41.59	46.87
KRH38269	Soybean	cytosol	25.56	45.61
AT1G50600.2	Thale cress	golgi, mitochondrion	43.49	45.59
HORVU2Hr1G043780.1	Barley	cytosol	38.73	42.81
HORVU3Hr1G091250.1	Barley	cytosol	33.49	38.22
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	18.25	34.53
HORVU3Hr1G012520.1	Barley	cytosol	18.25	25.22
HORVU4Hr1G080460.5	Barley	cytosol	19.52	21.13
HORVU4Hr1G027480.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	23.65	21.07
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	21.27	20.81
HORVU3Hr1G012550.6	Barley	cytosol	19.68	20.81
HORVU4Hr1G027900.1	Barley	cytosol	21.75	20.69
HORVU4Hr1G027610.1	Barley	cytosol	21.59	20.09
HORVU4Hr1G027520.2	Barley	cytosol, peroxisome	20.48	19.75
HORVU2Hr1G094040.2	Barley	cytosol, plastid	11.75	19.22
HORVU1Hr1G004440.1	Barley	cytosol	21.9	19.19
HORVU5Hr1G020900.1	Barley	cytosol	22.06	18.66
HORVU5Hr1G045020.29	Barley	cytosol	22.22	17.79
HORVU4Hr1G027920.1	Barley	peroxisome	21.75	17.28
HORVU3Hr1G086210.1	Barley	cytosol, nucleus, plasma membrane	21.27	16.94

Protein Annotations

EnsemblPlants:HORVU5Hr1G099160.1	EnsemblPlantsGene:HORVU5Hr1G099160	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B482D65	UniProt:A0A287SGY5
MapMan:15.5.12	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:609489207..609496413

Molecular Weight (calculated)

70064.2 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.258

Length

630 amino acids

Sequence
(BLAST)

001: IHQSPSPITH PPSLLHLLSP PGPSIPPELL PSCPPSTRST STPGTDCFLF PALCWSRIWD PLRRRRSFLD GRIDGRINFI LSMSHKVAIT SMSAKASERT
101: YRCSDDSQMA YYNNSVPLAE NGRFYMMQNQ LDAHYTSSGD GSQKISSNPQ IFEAQYCTLE SSSANGTYPT QSSTSSHSIS PISGSPLSQH DSYSYHTYDS
201: PPTVSCVTEI PDLQSKLKEL ENAILGPELD IASDSPESLL QANNPLKQDD WRQLLGINTG DLKQVIIACG KAVAENDIYT QVLISELGQL VSVSGDPMQR
301: LGAYILEGLV ARLSFTGSRL YKSLKCKEPT SSELMSYMHL LCEICPFYKF GYMSANGAIA EAIKGENLIH IIDFQIAQGS QWITIIQALA ARPGGPPRLR
401: ITGIDDSNSA YARGGGLDMV GTKLHNVSAS YGLPFEFNAV HAASHEVYLQ HLDIRPGEVI VVNFAYQLHH TPDESVSMEN HRDRIVRMVK SLSPKVVTLV
501: EQESNTNTPF FPRYLETLDY YTAMFESIDV ALPRDDKRRI STEQHCVARD IVNLIACEGA ERVERHEVFG KWKTRFAMAG FRPYPLSSVV NNTIKTLLNS
601: YHSCYRLEER DGVLFLGWKS RVLVVSSAWC

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.