Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G392600.1 | Wheat | cytosol | 93.05 | 90.31 |
| TraesCS3A01G360300.1 | Wheat | cytosol, extracellular, nucleus | 90.01 | 90.13 |
| TraesCS3D01G354100.1 | Wheat | cytosol, extracellular, nucleus | 92.79 | 89.73 |
| EES01740 | Sorghum | cytosol | 73.7 | 72.24 |
| Os01t0842200-01 | Rice | cytosol | 73.96 | 71.34 |
| Zm00001d042907_P001 | Maize | cytosol | 72.44 | 70.83 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 26.55 | 46.05 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 35.52 | 43.63 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 41.59 | 41.8 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 38.56 | 40.94 |
| HORVU4Hr1G027520.2 | Barley | cytosol, peroxisome | 33.25 | 40.28 |
| HORVU4Hr1G027900.1 | Barley | cytosol | 33.5 | 40.03 |
| HORVU4Hr1G027610.1 | Barley | cytosol | 33.63 | 39.29 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 29.2 | 38.76 |
| HORVU4Hr1G080460.5 | Barley | cytosol | 28.45 | 38.66 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.63 | 37.0 |
| HORVU4Hr1G027480.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 32.74 | 36.63 |
| HORVU4Hr1G027920.1 | Barley | peroxisome | 36.16 | 36.07 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 18.33 | 26.03 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 16.06 | 23.69 |
| HORVU2Hr1G043780.1 | Barley | cytosol | 16.81 | 23.33 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 15.04 | 21.56 |
| HORVU5Hr1G099160.1 | Barley | plastid | 16.94 | 21.27 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 7.21 | 14.81 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G086210.1 | EnsemblPlantsGene:HORVU3Hr1G086210 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF131 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000295BA1B | UniProt:M0YI62 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:616215859..616219778
Molecular Weight (calculated)
87458.7 Da
IEP (calculated)
5.981
GRAVY (calculated)
-0.328
Length
791 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMDAALYDW CGPLPAGSKL PIHPQITAED LESLLLLPSD GADAAAYLNA APAPLLPASA DTASPPPPPG DASAPSPAAP DDSEVFSDIV LGYINRMLMA
101: EDIDEKFDHY PAHPALLAAE KPFLEILADQ PPCSGGSTVE SPDGSSVTTN SFNSLASCNC AAPSGGLCAM QAPPALEFPT PEFPHPPHFY QDLSPESCVV
201: EAGGAWPPCD PMEFNPLPDA LLSQSSSFAS SNGSSVAFPE GFEPWLSTAD AVPHAALSDF VLQSQQAAQF SRGFEEASRF LPQESKLVID LDSLPSVWVK
301: QDNKVVEVKR EKADAQVAIH RGKKHFYGDD LDADEVRCCK HSAPVVDADH LVREMMDKVL LCDGETCSRG VKELREALQH DVANHSGAAH GKGSGHGKGR
401: GKKQVKQPKK EVVDLETLLI HCAQSVSIDD RRSATDLLRQ IRQHASATGD GDQRLAHCFA NGLEARLAGN GSRIYKLHTI SRFACTDVLK AYQLYLAACP
501: FKKISHYFAN QTIMNAVEKA KKVHIVDFGV YYGFQWPCLI QRLGKRPGGP PELRITAIDT PQPGFRPAER IDEIGRYLSD YAQTFKVPFK YHGIASQFEA
601: VRVEDLHIEK DEILIVNSMF RFKTLMDESV VAESPRNMVL NTIRKMNPHV FIHGVTNGSY NAPFFVSRFR EALFHFSAAF DMLEANIPRD NEERLLIESA
701: LFSREAINVI SCEGMERMER PETYKQWQVR NQRAGFKQLP LDQEIMKRAR EKVKCYHKNF IIDEDNKWLL QGWKGRILYA LSTWKANPQS S
101: EDIDEKFDHY PAHPALLAAE KPFLEILADQ PPCSGGSTVE SPDGSSVTTN SFNSLASCNC AAPSGGLCAM QAPPALEFPT PEFPHPPHFY QDLSPESCVV
201: EAGGAWPPCD PMEFNPLPDA LLSQSSSFAS SNGSSVAFPE GFEPWLSTAD AVPHAALSDF VLQSQQAAQF SRGFEEASRF LPQESKLVID LDSLPSVWVK
301: QDNKVVEVKR EKADAQVAIH RGKKHFYGDD LDADEVRCCK HSAPVVDADH LVREMMDKVL LCDGETCSRG VKELREALQH DVANHSGAAH GKGSGHGKGR
401: GKKQVKQPKK EVVDLETLLI HCAQSVSIDD RRSATDLLRQ IRQHASATGD GDQRLAHCFA NGLEARLAGN GSRIYKLHTI SRFACTDVLK AYQLYLAACP
501: FKKISHYFAN QTIMNAVEKA KKVHIVDFGV YYGFQWPCLI QRLGKRPGGP PELRITAIDT PQPGFRPAER IDEIGRYLSD YAQTFKVPFK YHGIASQFEA
601: VRVEDLHIEK DEILIVNSMF RFKTLMDESV VAESPRNMVL NTIRKMNPHV FIHGVTNGSY NAPFFVSRFR EALFHFSAAF DMLEANIPRD NEERLLIESA
701: LFSREAINVI SCEGMERMER PETYKQWQVR NQRAGFKQLP LDQEIMKRAR EKVKCYHKNF IIDEDNKWLL QGWKGRILYA LSTWKANPQS S
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.