Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G092000.1 | Wheat | cytosol | 79.73 | 96.43 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 94.77 | 94.89 |
| Zm00001d030744_P001 | Maize | cytosol | 48.19 | 72.97 |
| Os12t0573200-01 | Rice | cytosol, plasma membrane | 72.21 | 72.9 |
| Zm00001d041536_P001 | Maize | cytosol | 65.77 | 69.01 |
| EES16206 | Sorghum | cytosol | 66.44 | 67.81 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 30.47 | 50.56 |
| HORVU4Hr1G027900.1 | Barley | cytosol | 44.56 | 50.15 |
| HORVU4Hr1G027610.1 | Barley | cytosol | 44.83 | 49.34 |
| HORVU4Hr1G027520.2 | Barley | cytosol, peroxisome | 42.82 | 48.85 |
| HORVU4Hr1G027920.1 | Barley | peroxisome | 48.99 | 46.03 |
| HORVU4Hr1G080460.5 | Barley | cytosol | 35.57 | 45.53 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 26.04 | 42.54 |
| HORVU4Hr1G027480.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 40.27 | 42.43 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 36.51 | 42.24 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 41.07 | 38.88 |
| HORVU3Hr1G086210.1 | Barley | cytosol, nucleus, plasma membrane | 40.94 | 38.56 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 29.13 | 36.41 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 32.35 | 33.52 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 19.46 | 26.03 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 18.39 | 25.56 |
| HORVU2Hr1G043780.1 | Barley | cytosol | 18.25 | 23.86 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 17.58 | 23.73 |
| HORVU5Hr1G099160.1 | Barley | plastid | 18.66 | 22.06 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 7.92 | 15.32 |
Protein Annotations
| EMBL:AK357996 | EnsemblPlants:HORVU5Hr1G020900.1 | EnsemblPlantsGene:HORVU5Hr1G020900 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF41 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI00020053BF |
| UniProt:F2D289 | MapMan:15.5.12 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D289]
Coordinates
chrchr5H:-:97832644..97835710
Molecular Weight (calculated)
81991.9 Da
IEP (calculated)
5.285
GRAVY (calculated)
-0.408
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSYLPHD MDFPSYLPAD TGSPGSGDPS LNLYLSDLIP GSPSAYLDLP PTPHHEQEQQ EPSPDGHDAA AGGGGGGGDS PSSTPEDLVL PFISRILMEE
101: DIDDKFFYDF PDNPALLEAQ QPFLEILSDP SSNSTSDDSN NRAVSPCSPS DASVGTAAQL PPTPAAVDSY DRFRYEPVDL DPAAFFGGGA NSDLMSSAFL
201: KGMQEANKFL PSQDKLVIDL EASSGQFFKG VEEGNKFLPR EDKLVAGFNG HAAPASAPAV LSVKKEEAVD SVSANSGGGR GRKNPYHDDE LEQEGGRSSK
301: QSALGDDVSA REMFDRMLMP SDEMCIVQME NLRIAMQEAV AKNDGGGGKG GNGKGRGRRG GSDVVDLRTL LIHCAQAVAT DDRRSATELL KQIKLHARPD
401: GDGTQRLAHC FAEGLQARMA GTGGLVHQSL MATRISAVDM LKAYQLYMAA ICFKKVFFLF SNSTIYNASL GKKKIHIIDY GIQYGFQWPC FLRRISQRPG
501: GPPNVRITGI DLPQPGFRPT ERIEETGRRL KKYAHEFNVP FQYRVIARAK LESLRKEDLD IDPDEVLIVN SLLQFKNLMD ESVVLESPRD VVLKNIRKMR
601: PHTFIHAIVN GSFSAPFFVT RFREVLFFYS ALFDVLDTTT PRDNEQRMLI EQNILGRAAL NVIACEGTDR VERPETYKQW QVRNQRAGLK LLPLNPEVIG
701: LARDKVKNCY HKDFVIDVDQ QWLLQGWKGR ILYAISTWTA NDASS
101: DIDDKFFYDF PDNPALLEAQ QPFLEILSDP SSNSTSDDSN NRAVSPCSPS DASVGTAAQL PPTPAAVDSY DRFRYEPVDL DPAAFFGGGA NSDLMSSAFL
201: KGMQEANKFL PSQDKLVIDL EASSGQFFKG VEEGNKFLPR EDKLVAGFNG HAAPASAPAV LSVKKEEAVD SVSANSGGGR GRKNPYHDDE LEQEGGRSSK
301: QSALGDDVSA REMFDRMLMP SDEMCIVQME NLRIAMQEAV AKNDGGGGKG GNGKGRGRRG GSDVVDLRTL LIHCAQAVAT DDRRSATELL KQIKLHARPD
401: GDGTQRLAHC FAEGLQARMA GTGGLVHQSL MATRISAVDM LKAYQLYMAA ICFKKVFFLF SNSTIYNASL GKKKIHIIDY GIQYGFQWPC FLRRISQRPG
501: GPPNVRITGI DLPQPGFRPT ERIEETGRRL KKYAHEFNVP FQYRVIARAK LESLRKEDLD IDPDEVLIVN SLLQFKNLMD ESVVLESPRD VVLKNIRKMR
601: PHTFIHAIVN GSFSAPFFVT RFREVLFFYS ALFDVLDTTT PRDNEQRMLI EQNILGRAAL NVIACEGTDR VERPETYKQW QVRNQRAGLK LLPLNPEVIG
701: LARDKVKNCY HKDFVIDVDQ QWLLQGWKGR ILYAISTWTA NDASS
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.