Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030744_P001 | Maize | cytosol | 63.8 | 92.07 |
| EES16206 | Sorghum | cytosol | 91.83 | 89.32 |
| Os12t0573200-01 | Rice | cytosol, plasma membrane | 72.96 | 70.19 |
| TraesCS5D01G092000.1 | Wheat | cytosol | 60.42 | 69.64 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 69.15 | 65.99 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 69.01 | 65.77 |
| Zm00001d048601_P001 | Maize | cytosol | 44.08 | 48.75 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 30.7 | 48.55 |
| Zm00001d048604_P001 | Maize | cytosol | 52.11 | 48.37 |
| Zm00001d048588_P001 | Maize | cytosol | 41.55 | 46.53 |
| Zm00001d003553_P001 | Maize | cytosol | 39.3 | 45.96 |
| Zm00001d048602_P001 | Maize | cytosol | 40.56 | 43.24 |
| Zm00001d048600_P001 | Maize | nucleus | 39.15 | 43.1 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 32.68 | 42.88 |
| Zm00001d034664_P001 | Maize | plastid | 33.52 | 42.58 |
| Zm00001d048681_P001 | Maize | cytosol | 34.08 | 42.53 |
| Zm00001d048682_P001 | Maize | nucleus | 36.76 | 41.49 |
| Zm00001d028603_P001 | Maize | cytosol | 42.82 | 41.42 |
| Zm00001d007713_P001 | Maize | cytosol | 33.24 | 39.4 |
| Zm00001d035671_P001 | Maize | cytosol | 34.65 | 39.3 |
| Zm00001d011070_P001 | Maize | cytosol | 34.23 | 38.76 |
| Zm00001d042907_P001 | Maize | cytosol | 42.25 | 37.08 |
| Zm00001d047813_P002 | Maize | nucleus | 43.24 | 37.03 |
| Zm00001d033166_P001 | Maize | nucleus | 34.51 | 33.47 |
| Zm00001d035670_P001 | Maize | cytosol | 33.8 | 33.06 |
| Zm00001d048603_P001 | Maize | cytosol | 51.41 | 25.65 |
| Zm00001d030500_P001 | Maize | nucleus | 19.44 | 25.46 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 18.87 | 25.0 |
| Zm00001d021946_P001 | Maize | cytosol | 19.3 | 24.55 |
| Zm00001d006701_P001 | Maize | cytosol | 19.15 | 24.55 |
| Zm00001d038225_P001 | Maize | cytosol | 18.59 | 23.53 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 18.45 | 21.23 |
| Zm00001d051461_P001 | Maize | cytosol | 16.9 | 19.77 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 16.06 | 18.3 |
| Zm00001d002573_P001 | Maize | cytosol | 15.77 | 17.98 |
Protein Annotations
| EnsemblPlants:Zm00001d041536_P001 | EnsemblPlants:Zm00001d041536_T001 | EnsemblPlantsGene:Zm00001d041536 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| ncoils:Coil | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF41 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:ONM33213.1 |
| SEG:seg | UniParc:UPI0002214B2B | UniProt:A0A1D6MWT0 | MapMan:15.5.12 | : | : |
Description
GRAS domain family50 GRAS domain family50
Coordinates
chr3:-:126130758..126132890
Molecular Weight (calculated)
78395.7 Da
IEP (calculated)
5.175
GRAVY (calculated)
-0.339
Length
710 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSCDPSPS PGADDLFLSL SDLGPTSPSA YLDLPPTPQP QQGIKGPTQD LLLPYISSML MEDDIDDTFF YDYPDNPALL QAQQSFLDVL SDDATVPTTT
101: TTHSSASVNH HHSSSSSDAS ASGPLTPAAV DSYAPAPAAQ FDSFDFDPAA FFSNGANSDL MTSAFLKGME EANKFLPTQD KLVIDLDPPD DPKRFVLPTP
201: AADKLAPGLN AAAPTVHVAV AVKEEEAILA APDAAPGSGG AVLGRGRRNR FDDEEDLELQ RRSSKQSALE GDGDERDVFE KYIIASPEMC TEQMQKLRIA
301: MQEAAAKREA AAGENGKAKG RRGGREVVDL RTLLTHCAQA VASDDRRSAT ELLKQIKQHA SPLGDATQRL AHCFAEGLQA RLAGTGSMVY QSLMAKRTSA
401: TDILQAYQLY MAAICFKKVV CLFSNHTIYN AGLGKKKIHI VDYGIQYGFQ WPCFLRWIAD REGGPPEVRI TGIDLPQPGF RPTQRIEETG RRLSKYAQQF
501: GVPFKYQAIA ASKMESIRVE DLNLDPEEVL IVNCLYQFKN LMDESVVIES PRDIVLNNIR NMRPHTFIHA IVNGSFSAPF FVTRFREALF FYSALFDALD
601: ATTPRDSNQR MLIEENLFGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKQQPLNPD VVQVVRNKVK DCYHKDFVID VDHRWLLQGW KGRILYAVST
701: WVANDAPSYI
101: TTHSSASVNH HHSSSSSDAS ASGPLTPAAV DSYAPAPAAQ FDSFDFDPAA FFSNGANSDL MTSAFLKGME EANKFLPTQD KLVIDLDPPD DPKRFVLPTP
201: AADKLAPGLN AAAPTVHVAV AVKEEEAILA APDAAPGSGG AVLGRGRRNR FDDEEDLELQ RRSSKQSALE GDGDERDVFE KYIIASPEMC TEQMQKLRIA
301: MQEAAAKREA AAGENGKAKG RRGGREVVDL RTLLTHCAQA VASDDRRSAT ELLKQIKQHA SPLGDATQRL AHCFAEGLQA RLAGTGSMVY QSLMAKRTSA
401: TDILQAYQLY MAAICFKKVV CLFSNHTIYN AGLGKKKIHI VDYGIQYGFQ WPCFLRWIAD REGGPPEVRI TGIDLPQPGF RPTQRIEETG RRLSKYAQQF
501: GVPFKYQAIA ASKMESIRVE DLNLDPEEVL IVNCLYQFKN LMDESVVIES PRDIVLNNIR NMRPHTFIHA IVNGSFSAPF FVTRFREALF FYSALFDALD
601: ATTPRDSNQR MLIEENLFGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKQQPLNPD VVQVVRNKVK DCYHKDFVID VDHRWLLQGW KGRILYAVST
701: WVANDAPSYI
001: MDPNFSESLN GFEYFDGNPN LLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD SLALRKTEEM LQQVITDSQN QSFSPADSLI TNSWDASGSI
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
Arabidopsis Description
SCL34Scarecrow-like protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P0C884]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.