Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 92.13 | 92.13 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 91.17 | 87.12 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 74.48 | 74.96 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 70.63 | 70.18 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 70.95 | 70.05 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 70.31 | 69.41 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 37.4 | 60.52 |
| Zm00001d051461_P001 | Maize | cytosol | 58.59 | 60.13 |
| GSMUA_AchrUn_... | Banana | plastid | 48.15 | 51.28 |
| GSMUA_Achr5P12810_001 | Banana | cytosol, plastid | 45.1 | 50.0 |
| GSMUA_Achr4P26400_001 | Banana | cytosol, mitochondrion, plastid | 46.71 | 49.83 |
| GSMUA_Achr1P03650_001 | Banana | mitochondrion | 43.5 | 47.54 |
| GSMUA_Achr9P18770_001 | Banana | cytosol | 41.73 | 45.69 |
| GSMUA_Achr4P24960_001 | Banana | cytosol | 35.15 | 45.15 |
| CDY27821 | Canola | cytosol | 30.98 | 43.47 |
| CDY00533 | Canola | cytosol | 30.82 | 43.05 |
| Bra028312.1-P | Field mustard | cytosol | 30.98 | 42.51 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 36.28 | 38.37 |
| Solyc06g036170.1.1 | Tomato | nucleus | 36.44 | 37.96 |
| PGSC0003DMT400076932 | Potato | nucleus | 36.28 | 37.29 |
| CDX91655 | Canola | cytosol | 34.99 | 37.07 |
| Bra022596.1-P | Field mustard | plastid | 34.35 | 36.96 |
| CDY27063 | Canola | cytosol, plastid | 34.03 | 36.81 |
| Solyc03g025170.1.1 | Tomato | nucleus | 36.92 | 36.45 |
| AT5G52510.1 | Thale cress | nucleus | 36.6 | 35.62 |
| KRG91573 | Soybean | plastid | 33.87 | 35.52 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 37.24 | 35.47 |
| KRH35251 | Soybean | plastid | 33.39 | 35.25 |
| KRH38397 | Soybean | plastid | 29.7 | 34.26 |
| KRH08880 | Soybean | plastid | 34.99 | 33.18 |
| Zm00001d038225_P001 | Maize | cytosol | 25.68 | 28.52 |
| Zm00001d021946_P001 | Maize | cytosol | 23.27 | 25.99 |
| Zm00001d006701_P001 | Maize | cytosol | 22.95 | 25.81 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 21.83 | 25.37 |
| Zm00001d030500_P001 | Maize | nucleus | 21.03 | 24.17 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 22.79 | 23.01 |
| Zm00001d030744_P001 | Maize | cytosol | 16.53 | 20.93 |
| Zm00001d007713_P001 | Maize | cytosol | 18.94 | 19.7 |
| Zm00001d048681_P001 | Maize | cytosol | 17.34 | 18.98 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 16.05 | 18.48 |
| Zm00001d048682_P001 | Maize | nucleus | 17.98 | 17.81 |
| Zm00001d034664_P001 | Maize | plastid | 15.89 | 17.71 |
| Zm00001d048601_P001 | Maize | cytosol | 17.98 | 17.45 |
| Zm00001d048602_P001 | Maize | cytosol | 18.3 | 17.12 |
| Zm00001d003553_P001 | Maize | cytosol | 16.53 | 16.97 |
| Zm00001d011070_P001 | Maize | cytosol | 17.01 | 16.91 |
| Zm00001d048588_P001 | Maize | cytosol | 16.69 | 16.4 |
| Zm00001d035671_P001 | Maize | cytosol | 16.37 | 16.29 |
| Zm00001d041536_P001 | Maize | cytosol | 17.98 | 15.77 |
| Zm00001d048604_P001 | Maize | cytosol | 18.3 | 14.9 |
| Zm00001d028603_P001 | Maize | cytosol | 17.18 | 14.58 |
| Zm00001d048600_P001 | Maize | nucleus | 14.93 | 14.42 |
| Zm00001d042907_P001 | Maize | cytosol | 17.82 | 13.72 |
| Zm00001d033166_P001 | Maize | nucleus | 15.73 | 13.39 |
| Zm00001d035670_P001 | Maize | cytosol | 15.41 | 13.22 |
| Zm00001d047813_P002 | Maize | nucleus | 17.18 | 12.91 |
| Zm00001d048603_P001 | Maize | cytosol | 18.46 | 8.08 |
Protein Annotations
| EntrezGene:103646038 | MapMan:15.5.12 | UniProt:A0A060CY61 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| EMBL:KJ727975 | ProteinID:ONM14680.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF127 |
| InterPro:TF_GRAS | UniParc:UPI000221FC20 | EnsemblPlantsGene:Zm00001d002573 | EnsemblPlants:Zm00001d002573_P001 | EnsemblPlants:Zm00001d002573_T001 | SEG:seg |
Description
GRAS-transcription factor 52GRAS transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A060CY61]
Coordinates
chr2:+:15738092..15739963
Molecular Weight (calculated)
65574.6 Da
IEP (calculated)
6.574
GRAVY (calculated)
-0.116
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGAPWRDP RQGYSYGVGS AMQLQLQLQQ RADAAAGGGV LKRSLGELER WQHHQQQQVA AQQALYLRAV RQRTAAAVDI AALLGGTPAQ PLVLPGSSFG
101: GGLASPSSTL SSSLTTASRA AVPLMQPQLQ RQVPLTTSSP QTQPFGLSTA PLPQPSVSSE LFILQELEKQ LLDDDDDDEP VAAMSGTGSA VTNSEWEETI
201: QQLSSIAAAP SPGLPAAATP NNNNNNVGMT RSPSNSSTAS SSASCSPPTP GAASRQLLSE AAVAIADGHH EAAAAHLAAL KRAANQHGDA EQRLIAMMVA
301: ALSSRIAPAA SAPSQLLADL CSVEQRAGSQ LLQDLSPCFR VALHAASAAI VEAVGDHRAI HLVDFDVSFP QHAALIQYLA DRRVQGRSLK VTAVTDPSSP
401: FTQSLTASLP AIEERLKKLA ERAGVEYRFT VVSCRAAELD ASRLCCEPGE AVAVNLAFAL SHVPDESVSP ANPRDELLRR VRALGPQVVT LVEQELNTNT
501: APLAARFTDA CAHYGAILES LDATLAREIA EKARAEAALS KKAANAVGRD GPDRLERCEV FGKWRARFGM AGFRPVSLGS SIAEELVGAR VGHVPPGFTV
601: KAENGVLRFC WMGRAVTVAS AWR
101: GGLASPSSTL SSSLTTASRA AVPLMQPQLQ RQVPLTTSSP QTQPFGLSTA PLPQPSVSSE LFILQELEKQ LLDDDDDDEP VAAMSGTGSA VTNSEWEETI
201: QQLSSIAAAP SPGLPAAATP NNNNNNVGMT RSPSNSSTAS SSASCSPPTP GAASRQLLSE AAVAIADGHH EAAAAHLAAL KRAANQHGDA EQRLIAMMVA
301: ALSSRIAPAA SAPSQLLADL CSVEQRAGSQ LLQDLSPCFR VALHAASAAI VEAVGDHRAI HLVDFDVSFP QHAALIQYLA DRRVQGRSLK VTAVTDPSSP
401: FTQSLTASLP AIEERLKKLA ERAGVEYRFT VVSCRAAELD ASRLCCEPGE AVAVNLAFAL SHVPDESVSP ANPRDELLRR VRALGPQVVT LVEQELNTNT
501: APLAARFTDA CAHYGAILES LDATLAREIA EKARAEAALS KKAANAVGRD GPDRLERCEV FGKWRARFGM AGFRPVSLGS SIAEELVGAR VGHVPPGFTV
601: KAENGVLRFC WMGRAVTVAS AWR
001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
Arabidopsis Description
SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.