Factsheet for PGSC0003DMT400076932

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036170.1.1	Tomato	nucleus	92.24	93.48
PGSC0003DMT400026240	Potato	nucleus, plastid	71.78	66.51
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	53.63	55.18
CDY27821	Canola	cytosol	39.6	54.05
CDY00533	Canola	cytosol	39.6	53.81
Bra028312.1-P	Field mustard	cytosol	39.77	53.08
KRG91573	Soybean	plastid	46.7	47.64
KRH35251	Soybean	plastid	46.2	47.46
CDY27063	Canola	cytosol, plastid	43.73	46.01
AT5G52510.1	Thale cress	nucleus	48.51	45.94
Bra022596.1-P	Field mustard	plastid	43.56	45.6
CDX91655	Canola	cytosol	43.89	45.24
KRH38397	Soybean	plastid	39.6	44.44
KRH08880	Soybean	plastid	47.85	44.14
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	39.11	40.58
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	36.96	39.86
GSMUA_AchrUn_...	Banana	plastid	38.12	39.49
GSMUA_Achr1P03650_001	Banana	mitochondrion	35.64	37.89
GSMUA_Achr9P18770_001	Banana	cytosol	34.98	37.26
Os04t0580300-01	Rice	cytosol, nucleus, plastid	37.62	36.83
Zm00001d002573_P001	Maize	cytosol	37.29	36.28
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	37.13	36.12
Os02t0681900-01	Rice	cytosol	36.14	35.44
TraesCS2B01G413500.1	Wheat	cytosol	36.8	35.34
TraesCS2D01G393200.1	Wheat	cytosol	36.47	35.25
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	36.47	35.02
EES12703	Sorghum	cytosol, nucleus, plastid	37.13	34.51
EES05727	Sorghum	cytosol	35.81	34.5
Zm00001d051461_P001	Maize	cytosol	34.32	34.27
GSMUA_Achr4P24960_001	Banana	cytosol	26.73	33.4
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	29.54	32.02
HORVU2Hr1G094040.2	Barley	cytosol, plastid	19.31	30.39
PGSC0003DMT400015696	Potato	cytosol	26.4	29.91
PGSC0003DMT400060553	Potato	cytosol	25.74	29.77
PGSC0003DMT400034763	Potato	cytosol	25.91	29.4
PGSC0003DMT400057111	Potato	nucleus	25.58	28.86
PGSC0003DMT400021748	Potato	nucleus	25.41	27.55
PGSC0003DMT400056120	Potato	cytosol	24.75	26.83
PGSC0003DMT400049492	Potato	cytosol	24.75	25.77
PGSC0003DMT400005480	Potato	cytosol	15.84	19.71
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	17.99	16.87
PGSC0003DMT400078286	Potato	nucleus	17.82	16.19
PGSC0003DMT400077972	Potato	cytosol	18.81	15.16
PGSC0003DMT400049420	Potato	cytosol	16.17	14.76
PGSC0003DMT400016258	Potato	cytosol	17.49	14.56
PGSC0003DMT400022997	Potato	cytosol, plastid	17.82	14.19
PGSC0003DMT400069949	Potato	cytosol	16.67	13.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400076932	EnsemblPlantsGene:PGSC0003DMG400029921	EntrezGene:102601000	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400029921
RefSeq:XP_006363331.1	SEG:seg	UniParc:UPI000295D422	UniProt:M1CXM0	MapMan:15.5.12	:

Description

GRAS9 [Source:PGSC_GENE;Acc:PGSC0003DMG400029921]

Coordinates

chr6:+:37601750..37603797

Molecular Weight (calculated)

66803.7 Da

IEP (calculated)

6.114

GRAVY (calculated)

-0.388

Length

606 amino acids

Sequence
(BLAST)

001: MSSDFSGGVP DFYGGAGRSN LIPMNNAQPQ IQFPHRPDGA SQNFHRRPTF IGKRSLAAFQ QQQQFQFLQQ QQQFQFLQQQ QQQGLGFYLR NVKPRSYQQA
101: SPISPLDYSV SSSSISSEFS PMTARHPLPI STANTNGVLS SGNPDCSAVA SYLNQVQNSL YQESEEKMMN RLHELEKQLL EDNNEEEEDT VSVVTNNDEW
201: SETIKNLITP ISNHLSPASS TSSCSSSMES PPVSSPKQSI VEAATAITDG KTNVAVQILT RLAQVADVRG SSEQRLTAYM VSALRSRVNS TEYPPPVMEL
301: HSKEHAVSTQ NLYEISPCFK LGFMAANLAI VEAVADHPSN IIHVIDFDIG QGGQYLHLLH ALATKNTDYP ISLKITAITT EFTGRADSRV NSIEDDLKTL
401: ANKVGISLIF NIISCSITDL SREKLGIEHD EALAVNFAYR LYRLPDESVT TENLRDELLR RVKGLSPKVV TLVEQELNGN TAAFVARVNE ACGYYGALLD
501: SLDATVSKDE TGRVKIEEGL SRKLTNSVAC EGRDRVERCE VFGKWRARMS MAGFGPRPMS QQIADSLLKR LNSGPRGNPG FNVNEQSGGI RFGWMGKTLT
601: VASAWC

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.