CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051461_P001	Maize	cytosol	81.88	84.84
Os02t0681900-01	Rice	cytosol	70.59	71.84
EES12703	Sorghum	cytosol, nucleus, plastid	60.1	57.98
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	46.58	50.17
GSMUA_AchrUn_...	Banana	plastid	46.1	49.57
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	43.88	49.11
GSMUA_Achr1P03650_001	Banana	mitochondrion	41.97	46.32
GSMUA_Achr9P18770_001	Banana	cytosol	40.86	45.17
GSMUA_Achr4P24960_001	Banana	cytosol	33.23	43.09
CDY27821	Canola	cytosol	28.93	40.99
CDY00533	Canola	cytosol	28.78	40.58
Bra028312.1-P	Field mustard	cytosol	28.93	40.09
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	35.93	38.37
Bra022596.1-P	Field mustard	plastid	34.18	37.13
CDY27063	Canola	cytosol, plastid	33.86	36.98
CDX91655	Canola	cytosol	33.7	36.05
Solyc06g036170.1.1	Tomato	nucleus	34.18	35.95
PGSC0003DMT400076932	Potato	nucleus	34.5	35.81
KRG91573	Soybean	plastid	33.39	35.35
Solyc03g025170.1.1	Tomato	nucleus	35.45	35.34
KRH35251	Soybean	plastid	32.75	34.92
PGSC0003DMT400026240	Potato	nucleus, plastid	35.93	34.56
AT5G52510.1	Thale cress	nucleus	34.98	34.38
KRH38397	Soybean	plastid	28.14	32.78
KRH08880	Soybean	plastid	33.55	32.12
KXG33821	Sorghum	cytosol	26.55	29.35
EES18257	Sorghum	cytosol	25.6	28.6
EER95348	Sorghum	cytosol	24.32	28.54
EER97449	Sorghum	cytosol	23.53	27.06
EER97346	Sorghum	cytosol	21.94	24.21
OQU84115	Sorghum	cytosol	16.22	20.94
OQU84111	Sorghum	cytosol	21.94	20.47
OQU83981	Sorghum	cytosol	16.06	20.32
OQU84113	Sorghum	cytosol, nucleus, plastid	19.24	18.94
OQU84120	Sorghum	nucleus	19.08	18.93
KXG29224	Sorghum	nucleus	20.51	18.61
OQU84116	Sorghum	nucleus	18.28	18.58
KXG29228	Sorghum	cytosol	18.12	18.42
KXG21080	Sorghum	cytosol	17.96	18.05
OQU83980	Sorghum	cytosol	17.81	18.04
KXG21079	Sorghum	cytosol	17.65	17.82
OQU83978	Sorghum	mitochondrion	17.81	17.69
KXG37250	Sorghum	cytosol	18.28	17.67
OQU83979	Sorghum	plastid	17.01	17.63
KXG38103	Sorghum	cytosol	17.49	17.57
EES09053	Sorghum	cytosol	17.81	17.5
KXG26392	Sorghum	cytosol	17.49	17.35
KXG29219	Sorghum	cytosol	18.92	17.27
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	17.33	17.17
KXG29223	Sorghum	cytosol	19.4	17.16
OQU81651	Sorghum	cytosol	19.08	17.14
OQU84114	Sorghum	mitochondrion	13.04	17.12
OQU84112	Sorghum	cytosol	19.4	17.02
KXG29232	Sorghum	cytosol	18.12	16.76
EES16206	Sorghum	cytosol	19.4	16.71
OQU84105	Sorghum	cytosol	19.08	16.44
OQU92829	Sorghum	cytosol	18.28	15.67
OQU91407	Sorghum	nucleus	17.01	15.6
OQU90003	Sorghum	cytosol	18.92	15.41
KXG38064	Sorghum	nucleus	17.33	15.14
EER91260	Sorghum	nucleus	16.69	14.56
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	18.6	14.53
KXG36217	Sorghum	cytosol	19.08	14.46
OQU91406	Sorghum	nucleus	16.85	14.17
EES01740	Sorghum	cytosol	18.12	14.13
EES18882	Sorghum	cytosol	15.58	13.37
EES18880	Sorghum	cytosol	15.26	12.96

Protein Annotations

MapMan:15.5.12	EntrezGene:8073212	UniProt:C5Y0Y1	EnsemblPlants:EES05727	ProteinID:EES05727	ProteinID:EES05727.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	EnsemblPlantsGene:SORBI_3004G281200	unigene:Sbi.16981
InterPro:TF_GRAS	UniParc:UPI0001A85EE3	RefSeq:XP_002452751.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:62358257..62360949

Molecular Weight (calculated)

65459.7 Da

IEP (calculated)

8.866

GRAVY (calculated)

-0.083

Length

629 amino acids

Sequence
(BLAST)

001: MDPAGAPWCD PRRGYAYAYG AGSAAQAPAL KRQPRPLLPP RQDVAAVASG GVLKRSHGEV ERWQQALYLR EVRQRVAAQS QIAHPPIDIG SVLAGAVVSR
101: APGSSRPPSS SFAGLSPQPS STLSSLTTAS HLETPPSHML PLLQRQMVAA PSAPPQAVAR VPAAGRSAAR ELVLLQELEK HLLGDDDDGE ADATGSACGS
201: TVTSSAWGDT IQELNSITAA PLASLPNNHN TAPAVSIRSP SNSSSSTASS AASSSPPTST ASSRQLLSEA AAAIADGNHA AGAAQLAVLK TAANPRGDAE
301: QRLVAMMASA LSSRIGRPPA PQHHLAGLCG AEQRAAWQLL HAVSPCFDLA LHGANLAILD AVADQRVIHL IDFDVSIAQH LALIEALSSR RVAGTCLKVT
401: AVADPTSPFT PALAQALPAT EQRLKRHAQQ AGLEFRFKAV SCVAGEIEAS RLGCEPGGGE ALVVNLAFVL SRVPDESVSP ANPRDELLRG VRALCPRVVT
501: LVEQELNANT APLAARFADA CAHYGAVLES LDATLARDSA QRARGEAALA NKAANAVARE GPDRVERCEV FGKWRARFGM AGLRPVAIGQ GIADRVKARL
601: RPGFDVKLDS GRLGVGWKGR VVTVASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.