CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G141100.1	Wheat	cytosol	47.5	46.74
OQU84115	Sorghum	cytosol	36.51	46.41
HORVU4Hr1G027520.2	Barley	cytosol, peroxisome	48.3	45.79
TraesCS4D01G136000.1	Wheat	cytosol	47.66	45.45
TraesCS4A01G176600.1	Wheat	cytosol	47.33	45.15
OQU84113	Sorghum	cytosol, nucleus, plastid	45.72	44.29
OQU83981	Sorghum	cytosol	35.54	44.27
KXG29228	Sorghum	cytosol	43.3	43.3
KXG29219	Sorghum	cytosol	47.82	42.96
OQU84111	Sorghum	cytosol	46.37	42.58
OQU84114	Sorghum	mitochondrion	32.79	42.38
KXG26392	Sorghum	cytosol	42.81	41.8
OQU84120	Sorghum	nucleus	42.81	41.8
EES09053	Sorghum	cytosol	42.33	40.94
OQU83980	Sorghum	cytosol	40.87	40.74
OQU83979	Sorghum	plastid	39.26	40.03
OQU84105	Sorghum	cytosol	46.85	39.73
KXG29224	Sorghum	nucleus	44.26	39.54
KXG29223	Sorghum	cytosol	45.23	39.38
EES16206	Sorghum	cytosol	46.37	39.32
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	39.9	38.9
OQU84112	Sorghum	cytosol	44.26	38.21
OQU83978	Sorghum	mitochondrion	38.13	37.28
GSMUA_Achr5P08320_001	Banana	cytosol	26.98	37.19
KXG29232	Sorghum	cytosol	40.71	37.06
OQU90003	Sorghum	cytosol	45.56	36.53
KXG36217	Sorghum	cytosol	48.95	36.51
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	46.85	36.02
OQU81651	Sorghum	cytosol	40.39	35.71
KXG21080	Sorghum	cytosol	34.41	34.03
Os11t0139600-01	Rice	nucleus	31.34	33.28
KXG38103	Sorghum	cytosol	33.6	33.23
KXG21079	Sorghum	cytosol	33.12	32.91
OQU92829	Sorghum	cytosol	37.64	31.74
KXG37250	Sorghum	cytosol	33.28	31.64
EES01740	Sorghum	cytosol	37.48	28.75
EES18880	Sorghum	cytosol	33.44	27.94
OQU91407	Sorghum	nucleus	30.69	27.7
EES18882	Sorghum	cytosol	32.63	27.56
EER91260	Sorghum	nucleus	31.66	27.18
KXG38064	Sorghum	nucleus	31.34	26.94
OQU91406	Sorghum	nucleus	31.02	25.67
EER97449	Sorghum	cytosol	21.49	24.31
EER97346	Sorghum	cytosol	21.32	23.16
EER95348	Sorghum	cytosol	19.87	22.95
EES18257	Sorghum	cytosol	20.19	22.2
KXG33821	Sorghum	cytosol	20.19	21.97
EES05727	Sorghum	cytosol	18.58	18.28
EES12703	Sorghum	cytosol, nucleus, plastid	17.61	16.72

Protein Annotations

EnsemblPlants:OQU84116	EnsemblPlantsGene:SORBI_3005G230700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF59	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU84116	ProteinID:OQU84116.1	SEG:seg
UniParc:UPI000B8B9CCC	UniProt:A0A1Z5RL82	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:71710907..71712793

Molecular Weight (calculated)

68558.5 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.296

Length

619 amino acids

Sequence
(BLAST)

001: MAATLEELSP SVFLHLPPTP HHDNGVPSSE QQQEDVALEH ISRLLMEEEE EDMHGMFLIN DNDPALVHAQ QSLAQIIASS SSSSSSTRNG NGASHLYKDG
101: NSATVSDMCA TATGAEACSV MDLLNMAFVK GREEGCKFLP KDNKKLVMKD TTSRNYGPEA EAGRACKVMA TVARPEEEAQ VQELIGRMML DDCEVPTEEM
201: ERLRAAMADE AAMSNSREAR RRRQQQVDMR TLLLSCAQAV DERHGARELL EQAKQHASPT GDATQRLAHC FVEALEARLA GTGSVLHRSL AALDTTTLLQ
301: QSPEFLQAYR LFAATCCFQR VGFAFANMTI CRAAAGSSRL HVVDYGLHLG LQWPDLLRRL AARDGGPPPE VTITCVDLPL PGFRPARHME ETGHRLSDYA
401: RELGVPFKFH AVAAARWEAV RIDPDPDPGV VLVVNSLFKL ETLADDSLVV DRSSPRDMVL GGIARMRPAV FTHGVVNGLC GNSFLTRFRE ALFYFSAAFD
501: MLDATLPRSS EQRMVLERDF LRACVVNVVA CEGHDRTDRF DTYKQWQQRS RRAGLRQLPL DPAVVGAVTE MVKQQCYHRE FVIDENDDGW LLQGWKGRIL
601: YAHSTWVALA DESAPPPRA

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.