CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G505900.1	Wheat	cytosol	38.2	45.19
TraesCS4A01G176500.1	Wheat	cytosol	43.22	41.57
TraesCS4B01G141200.1	Wheat	cytosol	48.64	41.09
TraesCS4D01G136100.1	Wheat	cytosol	49.06	40.24
HORVU4Hr1G080460.5	Barley	cytosol	47.18	38.83
TraesCS4D01G136200.1	Wheat	cytosol	48.43	38.16
OQU84115	Sorghum	cytosol	34.45	33.88
KXG29219	Sorghum	cytosol	47.6	33.09
OQU84116	Sorghum	nucleus	42.38	32.79
OQU83981	Sorghum	cytosol	33.61	32.39
OQU84113	Sorghum	cytosol, nucleus, plastid	43.01	32.24
OQU84120	Sorghum	nucleus	41.75	31.55
KXG29228	Sorghum	cytosol	40.71	31.5
OQU84105	Sorghum	cytosol	47.81	31.37
OQU83980	Sorghum	cytosol	39.87	30.76
OQU84111	Sorghum	cytosol	43.01	30.56
KXG26392	Sorghum	cytosol	40.29	30.44
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	40.29	30.39
GSMUA_Achr5P08320_001	Banana	cytosol	28.39	30.29
EES09053	Sorghum	cytosol	40.08	30.0
KXG29232	Sorghum	cytosol	42.38	29.85
OQU83979	Sorghum	plastid	37.58	29.65
OQU84112	Sorghum	cytosol	43.63	29.15
OQU83978	Sorghum	mitochondrion	38.41	29.07
KXG29224	Sorghum	nucleus	41.34	28.57
KXG29223	Sorghum	cytosol	42.17	28.41
EES16206	Sorghum	cytosol	42.8	28.08
OQU90003	Sorghum	cytosol	45.09	27.98
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	45.09	26.83
KXG36217	Sorghum	cytosol	46.35	26.75
OQU81651	Sorghum	cytosol	38.62	26.43
KXG37250	Sorghum	cytosol	34.86	25.65
KXG21080	Sorghum	cytosol	32.57	24.92
OQU92829	Sorghum	cytosol	36.53	23.84
KXG38103	Sorghum	cytosol	30.69	23.48
KXG21079	Sorghum	cytosol	30.48	23.43
OQU91407	Sorghum	nucleus	31.73	22.16
EES01740	Sorghum	cytosol	36.74	21.81
KXG38064	Sorghum	nucleus	32.15	21.39
EER91260	Sorghum	nucleus	31.32	20.8
OQU91406	Sorghum	nucleus	31.73	20.32
EES18882	Sorghum	cytosol	29.44	19.24
EES18880	Sorghum	cytosol	29.65	19.16
EER97449	Sorghum	cytosol	19.0	16.64
EER95348	Sorghum	cytosol	17.75	15.86
EER97346	Sorghum	cytosol	18.16	15.26
KXG33821	Sorghum	cytosol	16.91	14.24
EES18257	Sorghum	cytosol	16.7	14.21
EES05727	Sorghum	cytosol	17.12	13.04
EES12703	Sorghum	cytosol, nucleus, plastid	15.24	11.2

Protein Annotations

EnsemblPlants:OQU84114	EnsemblPlantsGene:SORBI_3005G230400	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF59	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU84114	ProteinID:OQU84114.1	SEG:seg
UniParc:UPI000B8B975E	UniProt:A0A1Z5RK64	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:71702180..71703840

Molecular Weight (calculated)

53889.2 Da

IEP (calculated)

5.912

GRAVY (calculated)

-0.384

Length

479 amino acids

Sequence
(BLAST)

001: MAAPRVVRGF TPAPRVDVDA ASSSYLSRIS LLMEEEDEED DLADHPAFLH PFTQILSGAP LPDQAPVFPG GTPPEDKEYR TDMFTAAFFK AVEEATATLL
101: ARDTSSGGGK DRRDRHTVGG DDELEADAGR TSKMAMSESE EAGAREVFDE MMLRGFDVCS KEMEGLAISV ENVPAKDDDK KKARKRSRAW GKRRPAKVIE
201: LHTLLIHRAK AVIDDRQSVD ELLSQMKEHA SPTGDATQRL VYWFVQGLEA RLAGTESQVY RSLTANRTSL VEFLKAYQFF MKAAFMFANK TILDAAIGRS
301: KLHIVDYGLR SGFQWTELLR LLGTRDGGPP QVRITSIDLP QPGFHPANHM AEMGHRLTSC AHELPLSFCY VVAPWHTVCI DDLNVEPDEV LVVNDLFNFR
401: TLMDESVISD NPSPRDVVLS NIRKMEPDVF IQAVHVREWT VWNVVRHKLW QVRNQRADLR QLPLNGETVK MVRDMVKNQ

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.