CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048682_P001	Maize	nucleus	76.78	77.27
OQU83981	Sorghum	cytosol	49.92	63.58
OQU83980	Sorghum	cytosol	58.61	59.74
OQU83979	Sorghum	plastid	56.4	58.81
KXG29228	Sorghum	cytosol	53.08	54.28
OQU84115	Sorghum	cytosol	40.6	52.77
OQU84119	Sorghum	cytosol, extracellular, mitochondrion, plastid	51.66	51.5
Os11t0706200-00	Rice	nucleus	45.18	48.23
OQU81651	Sorghum	cytosol	46.45	42.0
OQU84113	Sorghum	cytosol, nucleus, plastid	39.81	39.44
OQU84111	Sorghum	cytosol	41.39	38.87
OQU84114	Sorghum	mitochondrion	29.07	38.41
OQU84116	Sorghum	nucleus	37.28	38.13
OQU84120	Sorghum	nucleus	38.07	38.01
KXG29219	Sorghum	cytosol	41.23	37.88
OQU84105	Sorghum	cytosol	43.13	37.4
GSMUA_Achr5P08320_001	Banana	cytosol	26.07	36.75
KXG29224	Sorghum	nucleus	40.13	36.65
KXG26392	Sorghum	cytosol	36.33	36.28
OQU84112	Sorghum	cytosol	40.92	36.12
EES09053	Sorghum	cytosol	35.86	35.47
EES16206	Sorghum	cytosol	40.76	35.34
KXG29232	Sorghum	cytosol	37.6	35.0
OQU90003	Sorghum	cytosol	41.23	33.81
KXG29223	Sorghum	cytosol	37.6	33.47
OQU84106	Sorghum	cytosol, endoplasmic reticulum, plastid	42.18	33.17
KXG36217	Sorghum	cytosol	42.65	32.53
KXG38103	Sorghum	cytosol	31.28	31.63
KXG21079	Sorghum	cytosol	30.96	31.46
KXG21080	Sorghum	cytosol	30.02	30.35
OQU92829	Sorghum	cytosol	33.02	28.47
KXG37250	Sorghum	cytosol	28.75	27.96
OQU91407	Sorghum	nucleus	29.07	26.82
EER91260	Sorghum	nucleus	30.49	26.77
EES01740	Sorghum	cytosol	34.12	26.77
KXG38064	Sorghum	nucleus	29.86	26.25
OQU91406	Sorghum	nucleus	29.86	25.27
EES18882	Sorghum	cytosol	29.07	25.1
EES18880	Sorghum	cytosol	28.91	24.7
EER97449	Sorghum	cytosol	19.75	22.85
EER95348	Sorghum	cytosol	18.96	22.39
EER97346	Sorghum	cytosol	17.69	19.65
KXG33821	Sorghum	cytosol	16.9	18.8
EES05727	Sorghum	cytosol	17.69	17.81
EES18257	Sorghum	cytosol	15.8	17.76
EES12703	Sorghum	cytosol, nucleus, plastid	16.43	15.95

Protein Annotations

EnsemblPlants:OQU83978	EnsemblPlantsGene:SORBI_3005G209000	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF41	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU83978	ProteinID:OQU83978.1	UniParc:UPI000B424CAC
UniProt:A0A1Z5RJS1	MapMan:15.5.12	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:69565399..69568433

Molecular Weight (calculated)

71630.4 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.267

Length

633 amino acids

Sequence
(BLAST)

001: MPLPARVFSW TPLSLPSRTI DQIKSPPFIL ATDPLTALPL ITMATTPEEF FCKGLMEQPP PSPPVFTDDL PQEPNGSSEG QHHVVPNEMM LSYVSHVLLD
101: DDIDEKLNNH PALLQGTYAV GAFLKGMEEA NKFLPKDNNF RRDELLNHIV RESSSHSGVK KRHSRDRDDH LQLEITRTSK AMTMTKEQEE NDLANEMLDE
201: MMLHGYKACI RGMDKMCVTM DSEVEKKNMN SGSRKGMRDG NVVDICRLMI SCAQEVAVNN HSRARELLKQ IMQHASETGD ATQRLAQCFS KGLEARLVGT
301: GSLLWELLMA ERPSVVELIK ASSVYYEACC FNKMALVFSE VTIMQAMVGK SRLHIVDYGM EFAYQWAGLL RSLASREGAL PEVKITAIGL PKPKSYPTEK
401: IEEIGCRLGR FAHEFGLPSF KFHTIKTNWE DACIEDLKIE ADEVLVVNDL FSFSTLTDEI ISIDGLSPRD IVLNNISKMR PHVFIQSVYN CSYGSSFLSR
501: FREMLLYYTA LFDIFDATIP RDCKSRMVLE QVVLGRSVLN AVSCEGADLV ERPERYRQWQ MRNQRAGLRQ LPLKTSIVEI VKDMVMKHHH KDFLIFQDGQ
601: WLLQGWRGRV HFAHSTWVAA DAASRGLGSS NAE

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.