Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006701_P001 | Maize | cytosol | 93.78 | 92.6 |
| Zm00001d021946_P001 | Maize | cytosol | 90.68 | 88.89 |
| Os07t0583600-01 | Rice | plasma membrane | 81.72 | 82.17 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 81.72 | 80.25 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 80.99 | 79.96 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 80.99 | 79.82 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 80.62 | 79.6 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 42.78 | 71.34 |
| Bra026077.1-P | Field mustard | cytosol | 36.38 | 67.69 |
| Bra015156.1-P | Field mustard | cytosol | 36.75 | 63.21 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.42 | 61.21 |
| CDY71156 | Canola | cytosol, plastid | 42.41 | 59.49 |
| CDY00883 | Canola | cytosol | 43.33 | 58.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.7 | 58.41 |
| AT2G04890.1 | Thale cress | cytosol | 44.06 | 58.35 |
| CDY07309 | Canola | cytosol | 25.59 | 58.33 |
| CDY22807 | Canola | nucleus | 44.24 | 57.62 |
| CDY37124 | Canola | nucleus | 44.24 | 57.62 |
| KRH74015 | Soybean | cytosol | 56.67 | 57.3 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 56.67 | 56.88 |
| KRH14104 | Soybean | cytosol | 56.49 | 56.7 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 56.12 | 56.33 |
| PGSC0003DMT400015696 | Potato | cytosol | 55.03 | 56.26 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.76 | 55.96 |
| EER95348 | Sorghum | cytosol | 54.11 | 55.22 |
| PGSC0003DMT400057111 | Potato | nucleus | 53.93 | 54.93 |
| Bra018860.1-P | Field mustard | nucleus | 52.47 | 54.67 |
| AT5G48150.4 | Thale cress | cytosol | 48.81 | 54.49 |
| CDY05700 | Canola | cytosol, plastid | 49.36 | 54.33 |
| Solyc07g065270.1.1 | Tomato | nucleus | 53.38 | 54.28 |
| CDY19966 | Canola | cytosol | 48.81 | 54.05 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 48.99 | 53.92 |
| CDY00074 | Canola | cytosol, plastid | 48.99 | 53.92 |
| CDY71174 | Canola | cytosol, plastid | 48.99 | 53.92 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 48.81 | 53.72 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 48.63 | 53.52 |
| Bra036185.1-P | Field mustard | cytosol | 48.26 | 53.33 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.64 | 51.87 |
| KRH73868 | Soybean | cytosol | 51.55 | 51.74 |
| KRG98562 | Soybean | nucleus | 51.37 | 51.56 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 50.82 | 51.29 |
| KRH11548 | Soybean | nucleus | 51.74 | 51.27 |
| KRH14274 | Soybean | cytosol | 50.82 | 51.01 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 50.64 | 50.83 |
| PGSC0003DMT400060553 | Potato | cytosol | 48.08 | 50.19 |
| KRH36572 | Soybean | cytosol | 50.27 | 50.18 |
| KRH46306 | Soybean | cytosol | 49.73 | 49.91 |
| KRH51175 | Soybean | cytosol | 48.45 | 48.89 |
| KRH01979 | Soybean | cytosol | 48.45 | 48.62 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.18 | 48.12 |
| Bra021063.1-P | Field mustard | plastid | 46.62 | 48.11 |
| CDY58168 | Canola | plastid | 46.62 | 48.11 |
| CDY50128 | Canola | cytosol, plastid | 46.62 | 47.84 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 52.29 | 47.59 |
| CDY35589 | Canola | cytosol | 46.07 | 47.46 |
| AT4G17230.1 | Thale cress | cytosol | 45.89 | 47.45 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 47.9 | 47.38 |
| Bra026237.1-P | Field mustard | plastid | 45.7 | 46.73 |
| CDY42968 | Canola | cytosol | 45.52 | 46.54 |
| KRH38269 | Soybean | cytosol | 28.34 | 43.91 |
| EER97346 | Sorghum | cytosol | 44.97 | 43.16 |
| KXG33821 | Sorghum | cytosol | 39.12 | 37.61 |
| EES18257 | Sorghum | cytosol | 37.29 | 36.23 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 20.48 | 33.63 |
| EES05727 | Sorghum | cytosol | 27.06 | 23.53 |
| KXG21080 | Sorghum | cytosol | 26.33 | 23.0 |
| KXG21079 | Sorghum | cytosol | 26.14 | 22.95 |
| OQU83981 | Sorghum | cytosol | 20.66 | 22.74 |
| KXG38103 | Sorghum | cytosol | 25.78 | 22.52 |
| KXG37250 | Sorghum | cytosol | 26.69 | 22.43 |
| OQU84115 | Sorghum | cytosol | 19.93 | 22.38 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 26.33 | 22.09 |
| OQU84113 | Sorghum | cytosol, nucleus, plastid | 25.78 | 22.07 |
| OQU84120 | Sorghum | nucleus | 25.23 | 21.77 |
| KXG26392 | Sorghum | cytosol | 25.05 | 21.61 |
| OQU84116 | Sorghum | nucleus | 24.31 | 21.49 |
| OQU84119 | Sorghum | cytosol, extracellular, mitochondrion, plastid | 24.68 | 21.26 |
| KXG29228 | Sorghum | cytosol | 23.03 | 20.36 |
| OQU84111 | Sorghum | cytosol | 25.05 | 20.33 |
| KXG38064 | Sorghum | nucleus | 26.69 | 20.28 |
| OQU91407 | Sorghum | nucleus | 25.41 | 20.26 |
| KXG29219 | Sorghum | cytosol | 25.41 | 20.17 |
| OQU92829 | Sorghum | cytosol | 26.87 | 20.03 |
| OQU83978 | Sorghum | mitochondrion | 22.85 | 19.75 |
| OQU84105 | Sorghum | cytosol | 26.33 | 19.73 |
| KXG29232 | Sorghum | cytosol | 24.5 | 19.71 |
| KXG29223 | Sorghum | cytosol | 25.41 | 19.55 |
| EES18882 | Sorghum | cytosol | 26.14 | 19.51 |
| EES18880 | Sorghum | cytosol | 26.33 | 19.43 |
| EES16206 | Sorghum | cytosol | 25.59 | 19.18 |
| OQU83979 | Sorghum | plastid | 21.21 | 19.11 |
| OQU84112 | Sorghum | cytosol | 25.05 | 19.11 |
| OQU84114 | Sorghum | mitochondrion | 16.64 | 19.0 |
| EES09053 | Sorghum | cytosol | 22.12 | 18.91 |
| OQU91406 | Sorghum | nucleus | 25.23 | 18.45 |
| EER91260 | Sorghum | nucleus | 24.31 | 18.45 |
| KXG29224 | Sorghum | nucleus | 23.22 | 18.33 |
| OQU90003 | Sorghum | cytosol | 25.23 | 17.88 |
| OQU83980 | Sorghum | cytosol | 20.29 | 17.87 |
| OQU81651 | Sorghum | cytosol | 22.3 | 17.43 |
| OQU84106 | Sorghum | cytosol, endoplasmic reticulum, plastid | 25.59 | 17.39 |
| EES01740 | Sorghum | cytosol | 25.59 | 17.35 |
| KXG36217 | Sorghum | cytosol | 25.23 | 16.63 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:8058364 | UniProt:C5XCH4 | InterPro:CIGR2 | EnsemblPlants:EER97449 | ProteinID:EER97449 |
| ProteinID:EER97449.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 | EnsemblPlantsGene:SORBI_3002G354900 |
| unigene:Sbi.10572 | InterPro:TF_GRAS | UniParc:UPI0001A837C1 | RefSeq:XP_002460928.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:+:71802273..71806524
Molecular Weight (calculated)
60135.2 Da
IEP (calculated)
6.122
GRAVY (calculated)
-0.283
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPTSRMV HPFGDVPRQT PKQFLYSGNS QHLCYPYQSA SDTHVVPQRH CTMRSHSPDA GSEDHDNHKQ YTLDSSATSG CSRHDSPSSQ SVHAGSGSPV
101: SLEDSHSGST NGNGSPVSAS CVTEDPTDLK QKLKDLEAAM LGTDPEIVNS LEISIADQLS LEPEEWKHMM SMPGGNLKEL LIACARAVEY NNSYAIDLMI
201: PELRKKVSVS GEPLERLGAY MVEGLVARLA ASGSSIYKAL KCKEPRSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS
301: LLQALAARPG GPPFVRITGI DDSVSAYARG GGLELVGRRL SHIAGLYKVP FQFDAVAISS SEVEEGHLGI VPGEAVAVNF TLELHHIPDE TVSTANHRDR
401: ILRLVKGLSP KVLTLVEQES NTNTAPFAQR FAETLDYYTA IFESIDLALP RDDRERINIE QHCLAREIVN LVACEGEERV ERHEVFGKWK ARLMMAGFRP
501: SPLSALVNAT IKTLLQSYSP DYKLAERDGV LYLGWKNRPL IVSSAWH
101: SLEDSHSGST NGNGSPVSAS CVTEDPTDLK QKLKDLEAAM LGTDPEIVNS LEISIADQLS LEPEEWKHMM SMPGGNLKEL LIACARAVEY NNSYAIDLMI
201: PELRKKVSVS GEPLERLGAY MVEGLVARLA ASGSSIYKAL KCKEPRSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS
301: LLQALAARPG GPPFVRITGI DDSVSAYARG GGLELVGRRL SHIAGLYKVP FQFDAVAISS SEVEEGHLGI VPGEAVAVNF TLELHHIPDE TVSTANHRDR
401: ILRLVKGLSP KVLTLVEQES NTNTAPFAQR FAETLDYYTA IFESIDLALP RDDRERINIE QHCLAREIVN LVACEGEERV ERHEVFGKWK ARLMMAGFRP
501: SPLSALVNAT IKTLLQSYSP DYKLAERDGV LYLGWKNRPL IVSSAWH
001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.