Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00883 | Canola | cytosol | 86.68 | 88.4 |
| Bra015156.1-P | Field mustard | cytosol | 67.55 | 87.74 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 46.97 | 59.15 |
| AT5G48150.4 | Thale cress | cytosol | 67.8 | 57.14 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 56.42 | 54.69 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 48.18 | 50.13 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 59.08 | 48.7 |
| Os03t0193000-01 | Rice | plastid | 59.32 | 45.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.46 | 45.79 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 59.32 | 45.71 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 59.56 | 44.73 |
| Os07t0583600-01 | Rice | plasma membrane | 58.84 | 44.67 |
| EER95348 | Sorghum | cytosol | 57.87 | 44.59 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 57.87 | 44.59 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 57.63 | 44.4 |
| EER97449 | Sorghum | cytosol | 58.35 | 44.06 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 58.84 | 43.86 |
| Zm00001d030500_P001 | Maize | nucleus | 57.38 | 43.73 |
| Zm00001d006701_P001 | Maize | cytosol | 58.6 | 43.68 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 56.66 | 43.58 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 58.35 | 43.27 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 58.11 | 43.24 |
| Zm00001d021946_P001 | Maize | cytosol | 58.35 | 43.19 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 51.09 | 43.15 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 57.63 | 42.96 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 60.53 | 41.6 |
| AT4G17230.1 | Thale cress | cytosol | 51.33 | 40.08 |
| HORVU5Hr1G099160.1 | Barley | plastid | 59.56 | 39.05 |
| AT1G21450.1 | Thale cress | nucleus | 46.73 | 32.55 |
| AT5G52510.1 | Thale cress | nucleus | 31.72 | 20.47 |
| AT3G46600.1 | Thale cress | cytosol | 27.36 | 19.38 |
| AT5G59450.1 | Thale cress | nucleus | 27.84 | 18.85 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 27.36 | 17.94 |
| AT2G29060.1 | Thale cress | cytosol | 28.81 | 17.15 |
| AT2G37650.1 | Thale cress | cytosol | 28.81 | 16.57 |
| AT1G07520.3 | Thale cress | cytosol | 27.6 | 16.38 |
| AT1G07530.1 | Thale cress | cytosol | 30.02 | 16.12 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:815036 | UniProt:A0A178VWV4 | ProteinID:AAD25580.1 | ProteinID:AAM15339.1 | ProteinID:AEC05882.1 |
| EMBL:AF210732 | EMBL:AK175210 | EMBL:AK175990 | EMBL:AK176099 | EMBL:AK221099 | ArrayExpress:AT2G04890 |
| EnsemblPlantsGene:AT2G04890 | RefSeq:AT2G04890 | TAIR:AT2G04890 | RefSeq:AT2G04890-TAIR-G | EnsemblPlants:AT2G04890.1 | TAIR:AT2G04890.1 |
| Unigene:At.48419 | EMBL:BT026455 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_178566.1 | ProteinID:OAP10840.1 | PFAM:PF03514 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF57 |
| UniProt:Q9S7H5 | Symbol:SCL21 | InterPro:TF_GRAS | UniParc:UPI000009E316 | : | : |
Description
SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
Coordinates
chr2:-:1720361..1722604
Molecular Weight (calculated)
46470.3 Da
IEP (calculated)
5.502
GRAVY (calculated)
-0.045
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.