Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04890.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT2G04890.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT2G04890.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT2G04890.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015156.1-P | Field mustard | cytosol | 74.07 | 94.34 |
| AT2G04890.1 | Thale cress | cytosol | 88.4 | 86.68 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 47.9 | 59.15 |
| CDY05700 | Canola | cytosol, plastid | 67.9 | 55.33 |
| CDY71174 | Canola | cytosol, plastid | 67.9 | 55.33 |
| CDY19966 | Canola | cytosol | 66.91 | 54.86 |
| CDY00074 | Canola | cytosol, plastid | 67.16 | 54.73 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 66.91 | 54.53 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 66.91 | 54.53 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 57.04 | 54.23 |
| CDY07309 | Canola | cytosol | 31.11 | 52.5 |
| CDY71156 | Canola | cytosol, plastid | 48.89 | 50.77 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 47.65 | 48.61 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 59.51 | 48.1 |
| CDY37124 | Canola | nucleus | 49.38 | 47.62 |
| CDY22807 | Canola | nucleus | 49.38 | 47.62 |
| Os03t0193000-01 | Rice | plastid | 60.25 | 45.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.9 | 45.33 |
| Os07t0583600-01 | Rice | plasma membrane | 60.49 | 45.04 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 59.51 | 44.96 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 59.26 | 44.78 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 59.01 | 44.59 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 60.0 | 44.18 |
| Zm00001d030500_P001 | Maize | nucleus | 59.01 | 44.1 |
| EER95348 | Sorghum | cytosol | 58.27 | 44.03 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 58.02 | 43.76 |
| Zm00001d006701_P001 | Maize | cytosol | 59.51 | 43.5 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 59.51 | 43.5 |
| EER97449 | Sorghum | cytosol | 58.52 | 43.33 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 52.1 | 43.15 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 59.26 | 43.09 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 59.01 | 43.06 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 58.52 | 42.78 |
| Zm00001d021946_P001 | Maize | cytosol | 58.02 | 42.11 |
| HORVU5Hr1G099160.1 | Barley | plastid | 60.74 | 39.05 |
| CDY35589 | Canola | cytosol | 50.86 | 38.79 |
| CDY42968 | Canola | cytosol | 50.62 | 38.32 |
| CDY58168 | Canola | plastid | 49.38 | 37.74 |
| CDY50128 | Canola | cytosol, plastid | 49.14 | 37.34 |
| CDY61060 | Canola | cytosol | 45.93 | 34.51 |
| CDY00377 | Canola | cytosol | 46.42 | 34.18 |
| CDY50240 | Canola | cytosol | 45.68 | 32.12 |
| CDY68224 | Canola | cytosol | 45.68 | 32.12 |
| CDX68389 | Canola | cytosol | 6.42 | 30.59 |
| CDY27821 | Canola | cytosol | 32.1 | 29.28 |
| CDY00533 | Canola | cytosol | 32.1 | 29.15 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 22.72 | 29.02 |
| CDY27063 | Canola | cytosol, plastid | 31.85 | 22.4 |
| CDX91655 | Canola | cytosol | 31.85 | 21.94 |
| CDY71578 | Canola | nucleus, plastid | 27.41 | 21.31 |
| CDX82987 | Canola | nucleus | 28.64 | 19.3 |
| CDY33040 | Canola | nucleus | 28.4 | 19.26 |
| CDX68388 | Canola | cytosol | 19.26 | 18.84 |
| CDY39530 | Canola | cytosol | 28.4 | 18.58 |
| CDY47877 | Canola | nucleus | 27.9 | 18.28 |
| CDX79750 | Canola | peroxisome | 29.63 | 17.8 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 29.38 | 17.68 |
| CDY06266 | Canola | cytosol | 27.16 | 17.41 |
| CDY47878 | Canola | nucleus | 29.38 | 17.22 |
| CDX86475 | Canola | nucleus | 29.63 | 16.9 |
| CDY31749 | Canola | cytosol | 29.14 | 16.25 |
| CDX77228 | Canola | cytosol | 26.91 | 16.22 |
| CDY15616 | Canola | nucleus | 27.65 | 15.66 |
| CDY06265 | Canola | cytosol | 26.67 | 15.65 |
| CDY09912 | Canola | cytosol | 26.67 | 15.43 |
| CDY09911 | Canola | nucleus | 18.52 | 12.84 |
Protein Annotations
| EnsemblPlants:CDY00883 | EnsemblPlantsGene:GSBRNA2T00110850001 | GO:A0A078EN19 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF57 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY00883 | ProteinID:CDY00883.1 | UniParc:UPI0004EDF426 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
BnaCnng00830DScarecrow-like protein 21 [Source:Projected from Arabidopsis thaliana (AT2G04890) UniProtKB/Swiss-Prot;Acc:Q9S7H5]
Coordinates
chrLK031922:-:1034900..1036117
Molecular Weight (calculated)
45396.8 Da
IEP (calculated)
6.021
GRAVY (calculated)
-0.027
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQPLPEIAE SINDSVNYEH SIWPGDTDDL MLIVDAISRG DLKWVLVACA KAISENNLLL AQWCIGELRR MVSISGEPIQ RLGAYMLEGL VARLAATGSS
101: IYKSLQSREP ESYDFLSYVY LLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGEG SQWVALIQAF AARPGGAPNI RITGIGDGSK LVAVRRRLEK
201: LAKKFDVPFK FHAVSASSCK VEVENLDVRI GEALGVNFAY MLHHLPDESV STENHRDRVL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF
301: ESIDVILPRN HKERINVEQH CLASDVVNII ACEGAERIER HELLGKWKSR FSMAGFVPYP LSSVVSATIR ALLKDYNNGY GIEERDGALC LGWMDRILVS
401: SCAWK
101: IYKSLQSREP ESYDFLSYVY LLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGEG SQWVALIQAF AARPGGAPNI RITGIGDGSK LVAVRRRLEK
201: LAKKFDVPFK FHAVSASSCK VEVENLDVRI GEALGVNFAY MLHHLPDESV STENHRDRVL RMVKSLSPKV VTLVEQECNT NTSPFLPRFL ETLSYYTAMF
301: ESIDVILPRN HKERINVEQH CLASDVVNII ACEGAERIER HELLGKWKSR FSMAGFVPYP LSSVVSATIR ALLKDYNNGY GIEERDGALC LGWMDRILVS
401: SCAWK
001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
Arabidopsis Description
SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.