Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80265 | Canola | endoplasmic reticulum, golgi | 71.76 | 19.24 |
| CDX82987 | Canola | nucleus | 97.65 | 13.81 |
| AT3G46600.1 | Thale cress | cytosol | 90.59 | 13.21 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 50.59 | 10.97 |
| GSMUA_Achr10P... | Banana | nucleus | 55.29 | 10.63 |
| CDY33040 | Canola | nucleus | 74.12 | 10.55 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 51.76 | 9.95 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 50.59 | 9.43 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 43.53 | 8.96 |
| Zm00001d034664_P001 | Maize | plastid | 56.47 | 8.59 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 62.35 | 8.2 |
| Solyc01g100200.2.1 | Tomato | nucleus | 62.35 | 7.96 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 58.82 | 7.76 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 55.29 | 7.68 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 52.94 | 7.53 |
| CDY71578 | Canola | nucleus, plastid | 45.88 | 7.49 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 57.65 | 7.48 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 57.65 | 7.46 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 57.65 | 7.46 |
| CDY47877 | Canola | nucleus | 54.12 | 7.44 |
| CDY39530 | Canola | cytosol | 54.12 | 7.43 |
| KRH23094 | Soybean | cytosol | 48.24 | 7.41 |
| KXG37250 | Sorghum | cytosol | 56.47 | 7.37 |
| KXG21080 | Sorghum | cytosol | 54.12 | 7.35 |
| KRH10240 | Soybean | cytosol | 51.76 | 7.26 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 54.12 | 7.23 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 50.59 | 7.21 |
| KXG38103 | Sorghum | cytosol | 52.94 | 7.19 |
| Zm00001d035671_P001 | Maize | cytosol | 52.94 | 7.19 |
| Zm00001d011070_P001 | Maize | cytosol | 52.94 | 7.18 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 56.47 | 7.13 |
| CDX79750 | Canola | peroxisome | 56.47 | 7.12 |
| KXG21079 | Sorghum | cytosol | 51.76 | 7.06 |
| Solyc06g082530.1.1 | Tomato | cytosol | 54.12 | 7.04 |
| CDY09911 | Canola | nucleus | 48.24 | 7.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.12 | 6.98 |
| CDY06266 | Canola | cytosol | 51.76 | 6.96 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 57.65 | 6.96 |
| OQU92829 | Sorghum | cytosol | 60.0 | 6.95 |
| KRH29771 | Soybean | cytosol | 55.29 | 6.91 |
| GSMUA_Achr10P... | Banana | cytosol | 48.24 | 6.84 |
| KRH24773 | Soybean | nucleus | 55.29 | 6.84 |
| Os03t0690600-03 | Rice | cytosol | 58.82 | 6.84 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 52.94 | 6.84 |
| Zm00001d028603_P001 | Maize | cytosol | 58.82 | 6.81 |
| PGSC0003DMT400078286 | Potato | nucleus | 52.94 | 6.75 |
| KRH23095 | Soybean | cytosol | 51.76 | 6.7 |
| Zm00001d035670_P001 | Maize | cytosol | 55.29 | 6.47 |
| CDY09912 | Canola | cytosol | 52.94 | 6.43 |
| CDY00883 | Canola | cytosol | 30.59 | 6.42 |
| OQU91407 | Sorghum | nucleus | 51.76 | 6.41 |
| CDY06265 | Canola | cytosol | 51.76 | 6.38 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 50.59 | 6.23 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 56.47 | 6.2 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 56.47 | 6.19 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 56.47 | 6.19 |
| CDY71156 | Canola | cytosol, plastid | 28.24 | 6.15 |
| Zm00001d047813_P002 | Maize | nucleus | 60.0 | 6.15 |
| EES18882 | Sorghum | cytosol | 52.94 | 6.14 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 56.47 | 6.1 |
| CDY27821 | Canola | cytosol | 31.76 | 6.08 |
| CDX86475 | Canola | nucleus | 50.59 | 6.06 |
| CDY00533 | Canola | cytosol | 31.76 | 6.05 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 50.59 | 5.96 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 50.59 | 5.96 |
| CDY22807 | Canola | nucleus | 29.41 | 5.95 |
| CDY37124 | Canola | nucleus | 29.41 | 5.95 |
| EES18880 | Sorghum | cytosol | 51.76 | 5.94 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 49.41 | 5.87 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 49.41 | 5.87 |
| Zm00001d033166_P001 | Maize | nucleus | 49.41 | 5.74 |
| CDY15616 | Canola | nucleus | 48.24 | 5.73 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 48.24 | 5.68 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 47.06 | 5.67 |
| CDY47878 | Canola | nucleus | 45.88 | 5.64 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 48.24 | 5.63 |
| OQU91406 | Sorghum | nucleus | 48.24 | 5.48 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 44.71 | 5.42 |
| KXG38064 | Sorghum | nucleus | 45.88 | 5.42 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 45.88 | 5.41 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 45.88 | 5.39 |
| CDX77228 | Canola | cytosol | 42.35 | 5.36 |
| EER91260 | Sorghum | nucleus | 44.71 | 5.27 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 43.53 | 5.26 |
| CDY00074 | Canola | cytosol, plastid | 30.59 | 5.23 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 43.53 | 5.19 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 29.41 | 5.03 |
| CDY05700 | Canola | cytosol, plastid | 29.41 | 5.03 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 29.41 | 5.03 |
| CDY71174 | Canola | cytosol, plastid | 29.41 | 5.03 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 42.35 | 4.97 |
| CDY31749 | Canola | cytosol | 42.35 | 4.96 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 41.18 | 4.87 |
| CDY19966 | Canola | cytosol | 28.24 | 4.86 |
| CDY58168 | Canola | plastid | 29.41 | 4.72 |
| CDY27063 | Canola | cytosol, plastid | 31.76 | 4.69 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 40.0 | 4.66 |
| CDY35589 | Canola | cytosol | 28.24 | 4.52 |
| CDY50128 | Canola | cytosol, plastid | 28.24 | 4.5 |
| CDY42968 | Canola | cytosol | 28.24 | 4.49 |
| CDX91655 | Canola | cytosol | 30.59 | 4.42 |
| CDY61060 | Canola | cytosol | 25.88 | 4.08 |
| CDY00377 | Canola | cytosol | 25.88 | 4.0 |
| CDY50240 | Canola | cytosol | 25.88 | 3.82 |
| CDY68224 | Canola | cytosol | 25.88 | 3.82 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 28.24 | 3.55 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 29.41 | 3.3 |
| CDX68388 | Canola | cytosol | 1.18 | 0.24 |
| CDY07309 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX68389 | EnsemblPlantsGene:GSBRNA2T00125764001 | GO:A0A078BX73 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF56 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX68389 | ProteinID:CDX68389.1 | UniParc:UPI0004EEAE46 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
BnaC01g24670D
Coordinates
chrLK031788:+:664712..664969
Molecular Weight (calculated)
10257.5 Da
IEP (calculated)
10.420
GRAVY (calculated)
-0.827
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MSVIACEGDE RFARPETYKQ WQVRILRAGF RPAKLNKQIM KEGKELVRER YHKDFVIDND NHWMFQGWKG RVLYALSCWK PAKKQ
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.