CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29771	Soybean	cytosol	92.14	93.09
KRH23095	Soybean	cytosol	63.46	66.36
KRH10240	Soybean	cytosol	58.52	66.34
KRH23094	Soybean	cytosol	49.05	60.94
VIT_06s0004g04990.t01	Wine grape	cytosol	35.66	55.43
CDX68389	Canola	cytosol	6.84	55.29
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	24.45	53.0
CDX80265	Canola	endoplasmic reticulum, golgi	24.31	52.68
GSMUA_Achr10P...	Banana	nucleus	30.57	47.51
TraesCS1B01G037500.1	Wheat	cytosol	27.95	46.49
VIT_06s0004g04980.t01	Wine grape	nucleus	47.6	46.45
VIT_06s0004g04970.t01	Wine grape	cytosol	44.25	46.2
KRH24780	Soybean	cytosol	44.25	46.06
Bra033813.1-P	Field mustard	nucleus	39.01	46.05
GSMUA_Achr10P...	Banana	cytosol	40.03	45.91
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	42.65	45.36
AT3G46600.1	Thale cress	cytosol	38.28	45.11
Zm00001d034664_P001	Maize	plastid	36.68	45.08
KRG99969	Soybean	cytosol	47.89	44.64
CDX82987	Canola	nucleus	39.01	44.59
Solyc06g082530.1.1	Tomato	cytosol	42.21	44.41
KRH49113	Soybean	cytosol	47.31	44.28
Solyc01g100200.2.1	Tomato	nucleus	42.79	44.14
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	40.76	44.03
PGSC0003DMT400078286	Potato	nucleus	42.5	43.78
KRH29773	Soybean	cytosol	39.01	43.65
HORVU3Hr1G012520.1	Barley	cytosol	28.82	43.42
KRH29774	Soybean	cytosol	39.45	42.95
GSMUA_Achr7P15080_001	Banana	cytosol	37.12	42.64
KRH65839	Soybean	cytosol, plastid	45.12	42.47
GSMUA_Achr8P02550_001	Banana	nucleus	24.16	42.35
AT5G59450.1	Thale cress	nucleus	37.41	42.13
KXG37250	Sorghum	cytosol	39.88	42.09
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	45.12	41.72
KRH29779	Soybean	cytosol	44.98	41.64
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	38.86	41.46
KRH23089	Soybean	cytosol	38.86	41.46
CDY33040	Canola	nucleus	35.95	41.37
GSMUA_Achr6P34090_001	Banana	nucleus	36.83	41.34
Os03t0690600-03	Rice	cytosol	43.96	41.31
KRH29775	Soybean	nucleus	40.47	41.31
OQU92829	Sorghum	cytosol	44.1	41.28
KRH10241	Soybean	cytosol, nucleus, peroxisome	41.34	41.28
TraesCS5B01G494500.1	Wheat	cytosol	39.3	41.1
TraesCS5D01G494900.1	Wheat	cytosol	39.3	41.1
TraesCS5A01G481300.1	Wheat	cytosol	39.01	40.92
Zm00001d028603_P001	Maize	cytosol	43.67	40.87
KRH10243	Soybean	nucleus	39.45	40.75
CDX68388	Canola	cytosol	24.45	40.58
KRH24775	Soybean	cytosol	40.03	40.44
KXG38103	Sorghum	cytosol	36.83	40.42
KRH24778	Soybean	nucleus	39.3	39.94
KRH23090	Soybean	vacuole	35.95	39.77
KXG21080	Sorghum	cytosol	36.1	39.62
Zm00001d011070_P001	Maize	cytosol	35.95	39.39
KXG21079	Sorghum	cytosol	35.52	39.17
Zm00001d035671_P001	Maize	cytosol	35.08	38.5
TraesCS5A01G139000.1	Wheat	cytosol, plastid	42.21	37.37
TraesCS5D01G152700.1	Wheat	cytosol, plastid	42.07	37.34
TraesCS5B01G138100.1	Wheat	cytosol, plastid	41.92	37.11
GSMUA_AchrUn_...	Banana	cytosol	35.52	37.03
HORVU5Hr1G045020.29	Barley	cytosol	42.07	36.72
Zm00001d047813_P002	Maize	nucleus	43.67	36.19
HORVU3Hr1G012550.6	Barley	cytosol	31.0	35.74
TraesCS1B01G037300.1	Wheat	cytosol	35.66	34.8
TraesCS1D01G030900.1	Wheat	cytosol	36.1	34.78
HORVU1Hr1G004440.1	Barley	cytosol	36.39	34.77
TraesCS1D01G030800.1	Wheat	cytosol	35.08	34.38
TraesCS1D01G031000.1	Wheat	cytosol	35.52	33.66
Zm00001d035670_P001	Maize	cytosol	35.37	33.47
TraesCS1A01G030200.1	Wheat	cytosol	34.79	33.15
TraesCS1D01G031200.1	Wheat	cytosol	35.08	33.06
TraesCS3D01G067900.1	Wheat	nucleus	33.19	33.04
TraesCS1A01G030300.1	Wheat	cytosol	33.92	33.0
EES18882	Sorghum	cytosol	35.08	32.88
TraesCS1B01G037400.1	Wheat	cytosol	34.5	32.78
OQU91407	Sorghum	nucleus	32.61	32.65
TraesCS3B01G081000.1	Wheat	cytosol	34.21	32.28
TraesCS3D01G067700.1	Wheat	cytosol	33.62	31.99
EES18880	Sorghum	cytosol	34.5	31.98
TraesCS3B01G081100.1	Wheat	nucleus	33.04	31.75
TraesCS3A01G067900.1	Wheat	cytosol	33.33	31.72
TraesCS3B01G080900.1	Wheat	nucleus	33.19	31.62
TraesCS3A01G068000.1	Wheat	nucleus	32.61	31.28
OQU91406	Sorghum	nucleus	33.92	31.15
KXG38064	Sorghum	nucleus	32.61	31.11
EER91260	Sorghum	nucleus	32.61	31.07
Zm00001d033166_P001	Maize	nucleus	32.9	30.87
TraesCS3D01G067800.1	Wheat	nucleus	30.28	30.77
TraesCS1B01G037200.1	Wheat	nucleus	33.62	30.52
KRH11548	Soybean	nucleus	21.98	27.36
KRH14104	Soybean	cytosol	21.69	27.34
KRH36572	Soybean	cytosol	21.69	27.19
KRH74015	Soybean	cytosol	21.25	26.99
KRH01979	Soybean	cytosol	20.96	26.42
KRH51175	Soybean	cytosol	20.82	26.38
KRG98562	Soybean	nucleus	20.23	25.5
KRH73868	Soybean	cytosol	19.94	25.14
KRH14274	Soybean	cytosol	19.8	24.95
KRH46306	Soybean	cytosol	19.8	24.95
KRH64568	Soybean	cytosol	19.8	22.82
KRH18097	Soybean	cytosol	19.51	22.67
KRH25905	Soybean	cytosol, plastid	18.63	22.54
KRH55599	Soybean	plastid	18.63	22.54
KRH53364	Soybean	cytosol	19.65	22.5
KRH27129	Soybean	plastid	18.34	22.46
KRH15917	Soybean	cytosol	19.21	22.34
KRH22210	Soybean	cytosol, plastid	18.63	22.18
KRH38269	Soybean	cytosol	10.92	21.25
KRG91573	Soybean	plastid	16.74	19.36
KRH35251	Soybean	plastid	16.01	18.64
KRH38397	Soybean	plastid	13.54	17.22
KRH08880	Soybean	plastid	15.57	16.29

Protein Annotations

EntrezGene:100813449	MapMan:15.5.12	EMBL:ACUP02007185	EnsemblPlantsGene:GLYMA_12G061900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	UniProt:K7LTB4	EnsemblPlants:KRH24773
ProteinID:KRH24773	ProteinID:KRH24773.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF56
InterPro:TF_GRAS	UniParc:UPI000233D8D3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:4510599..4513616

Molecular Weight (calculated)

77371.7 Da

IEP (calculated)

5.942

GRAVY (calculated)

-0.518

Length

687 amino acids

Sequence
(BLAST)

001: MLSTDSLLEN FPGSVNGFIF ENGPVSVFSN QNPASGFEVD DSVSPSESAT DSGPSSGASS NREHVESTKH SNPILRYISD ILMDEEDDLE RKPCMLQDCL
101: RLQAAEKSFY DALVRSYPSS PRQFDDNPDQ DDNFGGTTSS ESFSSYTTDN SCESDWFNGA SDFDSSFIQR SLIYSPEHAY VAPDPFRETQ AGVHFSNGAW
201: NLIHPQNKPR VIEDGVMQGS VTATGLREKR SYLMNDMSHE EERSNKLSSV YSDDSEPSSM FDEVLLCKDG KSPSIFYAGR EPSPSQIADS GGSNGKKTRS
301: KRGSNKGTRA SVTTVDLWTL LIQCAQAVAS FDQRTANETL KQIRQHSSPF GDGLQRLAHY FADGLEKRLA AGTPKFISFQ SASAADMLKA YRVYISASPF
401: LRMSNFLANR TILKLAQNES SLHIIDFGIS YGFQWPCLIQ RLSERPGGPP KLLMTGIDLP QPGFRPAERV EETGRWLEKY CKRFGVPFEY NCLAQKWETI
501: RLEDLKIDRS EVTVVNCLYR LKNLSDETVT ANCPRDALLR LIRRINPNIF MHGVVNGTYN APFFVTRFRE ALFHFSSLFD MFEVNVPRED PSRLMIEKGV
601: FGRDAINVIA CEGAERVERP ETYKQWQVRN QRAGFKQLPL APEHVNRVKE MVKKEHHKDF VVDEDGKWVL QGWKGRILFA VSSWVPA

Best Arabidopsis Sequence Match ( AT3G46600.1 )
(BLAST)

001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK

Arabidopsis Description

SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.