CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51175	Soybean	cytosol	93.58	94.1
KRH36572	Soybean	cytosol	75.23	74.82
KRH11548	Soybean	nucleus	75.6	74.64
VIT_00s0463g00020.t01	Wine grape	nucleus	65.87	65.87
Solyc11g012510.1.1	Tomato	mitochondrion	61.65	61.99
PGSC0003DMT400034763	Potato	cytosol	60.18	61.42
AT4G17230.1	Thale cress	cytosol	59.08	60.87
PGSC0003DMT400021748	Potato	nucleus	62.02	60.47
PGSC0003DMT400060553	Potato	cytosol	57.8	60.11
GSMUA_Achr4P07010_001	Banana	cytosol	35.96	59.76
Bra021063.1-P	Field mustard	plastid	57.8	59.43
CDY58168	Canola	plastid	57.8	59.43
CDY50128	Canola	cytosol, plastid	57.98	59.29
CDY35589	Canola	cytosol	57.43	58.95
CDY42968	Canola	cytosol	57.61	58.69
Bra026237.1-P	Field mustard	plastid	57.43	58.5
KRH74015	Soybean	cytosol	57.61	58.04
KRH14104	Soybean	cytosol	57.43	57.43
Solyc04g014830.1.1	Tomato	mitochondrion	57.98	57.14
TraesCS5A01G414000.1	Wheat	cytosol	43.12	55.16
TraesCS5A01G409800.1	Wheat	nucleus, plastid	49.91	54.29
GSMUA_Achr4P11050_001	Banana	nucleus	37.98	52.14
Zm00001d030500_P001	Maize	nucleus	51.19	51.48
GSMUA_AchrUn_...	Banana	nucleus	40.37	51.4
Os03t0193000-01	Rice	plastid	50.09	51.03
KRH73868	Soybean	cytosol	50.64	50.64
Zm00001d048199_P001	Maize	mitochondrion, nucleus	49.72	50.56
TraesCS5D01G419400.2	Wheat	cytosol	50.83	50.36
KRG98562	Soybean	nucleus	50.28	50.28
EER95348	Sorghum	cytosol	49.17	50.0
KRH46306	Soybean	cytosol	49.91	49.91
TraesCS4A01G039000.1	Wheat	nucleus	44.77	49.9
TraesCS2B01G217500.1	Wheat	cytosol	50.64	49.82
Os07t0583600-01	Rice	plasma membrane	49.72	49.82
HORVU4Hr1G071670.1	Barley	cytosol	48.81	49.63
KRH14274	Soybean	cytosol	49.54	49.54
TraesCS4D01G266400.1	Wheat	cytosol	48.62	49.44
TraesCS4B01G266700.1	Wheat	cytosol	48.44	49.16
HORVU2Hr1G036280.1	Barley	cytosol	50.09	49.01
TraesCS2D01G198200.1	Wheat	cytosol	49.72	48.83
TraesCS2A01G189600.1	Wheat	cytosol	49.54	48.74
EER97449	Sorghum	cytosol	48.62	48.45
Zm00001d006701_P001	Maize	cytosol	48.81	48.01
Zm00001d021946_P001	Maize	cytosol	48.26	47.13
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	28.62	46.85
HORVU5Hr1G099160.1	Barley	plastid	51.01	44.13
KRH38269	Soybean	cytosol	27.34	42.21
KRH25905	Soybean	cytosol, plastid	43.49	41.73
KRH27129	Soybean	plastid	42.94	41.71
KRH22210	Soybean	cytosol, plastid	44.04	41.59
KRH55599	Soybean	plastid	43.3	41.55
KRH18097	Soybean	cytosol	37.8	34.86
KRH15917	Soybean	cytosol	37.61	34.69
KRH64568	Soybean	cytosol	36.7	33.56
KRH53364	Soybean	cytosol	36.7	33.33
KRH35251	Soybean	plastid	28.07	25.93
KRG91573	Soybean	plastid	28.26	25.93
KRH38397	Soybean	plastid	23.67	23.89
KRH08880	Soybean	plastid	27.52	22.83
KRH23089	Soybean	cytosol	26.79	22.67
KRH29773	Soybean	cytosol	25.32	22.48
KRH10243	Soybean	nucleus	27.16	22.26
KRH10240	Soybean	cytosol	24.4	21.95
KRH29774	Soybean	cytosol	25.32	21.87
KRH23090	Soybean	vacuole	24.77	21.74
KRH24780	Soybean	cytosol	25.69	21.21
KRH29771	Soybean	cytosol	26.42	21.18
KRH29775	Soybean	nucleus	26.05	21.1
KRH23094	Soybean	cytosol	21.28	20.98
KRH24773	Soybean	nucleus	26.42	20.96
KRH23095	Soybean	cytosol	24.95	20.7
KRH24775	Soybean	cytosol	25.5	20.44
KRH49113	Soybean	cytosol	26.79	19.89
KRH65839	Soybean	cytosol, plastid	26.61	19.86
KRH24778	Soybean	nucleus	24.59	19.82
KRG99969	Soybean	cytosol	26.79	19.81
KRH10241	Soybean	cytosol, nucleus, peroxisome	24.77	19.62
KRH29779	Soybean	cytosol	26.42	19.41
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	26.42	19.38

Protein Annotations

EntrezGene:100776109	MapMan:15.5.12	EMBL:ACUP02010293	EnsemblPlantsGene:GLYMA_17G007600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1MQZ7	InterPro:IPR005202	ProteinID:KRH01978.1
EnsemblPlants:KRH01979	ProteinID:KRH01979	ProteinID:KRH01979.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF45	InterPro:Scarecrow-like_13	InterPro:TF_GRAS	UniParc:UPI000233ED9F	:	:

Description

hypothetical protein

Coordinates

chr17:+:646758..650347

Molecular Weight (calculated)

60858.7 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.380

Length

545 amino acids

Sequence
(BLAST)

001: MQTSQKHPSS AGAHFYHQPV QGIYQMLQSN LCQDSSSQGT SVSFETCKEQ YFTLESCPAP TNDFMDCDDS PSYASVSSKR TPFSPQGSQS CYSDHHQSSD
101: NTYGSPISGL SSVDDRHQLK HKLRELEISL LAPEESDITD SCGCCVVKGG LHGSSQLAKH NWDQIAENIA QFDLKGALKV CAQAVSDDDV PTARGWIDNV
201: LGKLVSVSGD PIQRLGAYLL EGLRARLESS GNLIYKSLKC EQPTSKELMS YMHILYQICP YWKFAYISAN AVIQETMANE SRIHIIDFQI AQGTQWHLLI
301: QALAHRPGGP PSLRVTGVDD SQSTHARGGG LWIVGERLSD FARSCGVPFE FHSAAISGCE VVRGNIEIRA GEALAVNFPY VLHHMPDESV STENHRDRLL
401: RLVKSLSPKV VTFVEQESNT NTSPFFQRFV ETLDYYTAMF ESIDVACPRD DKKRISAEQH CVARDMVNMI ACEGVERVER HELFGKWRSR LSMAGFKQCQ
501: LSSSVMVATQ NLLKEFSQNY RLEHRDGALY LGWMNRHMAT SSAWR

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.