Factsheet for Bra026237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42968	Canola	cytosol	98.69	98.69
Bra021063.1-P	Field mustard	plastid	87.66	88.49
AT4G17230.1	Thale cress	cytosol	87.1	88.09
Bra026077.1-P	Field mustard	cytosol	32.9	59.86
KRH51175	Soybean	cytosol	58.69	57.93
VIT_00s0463g00020.t01	Wine grape	nucleus	58.69	57.61
KRH36572	Soybean	cytosol	58.88	57.48
KRH01979	Soybean	cytosol	58.5	57.43
KRH11548	Soybean	nucleus	58.69	56.88
Solyc11g012510.1.1	Tomato	mitochondrion	55.51	54.8
PGSC0003DMT400034763	Potato	cytosol	54.58	54.68
PGSC0003DMT400021748	Potato	nucleus	56.26	53.85
PGSC0003DMT400060553	Potato	cytosol	52.71	53.82
Bra015156.1-P	Field mustard	cytosol	31.59	53.14
GSMUA_Achr4P07010_001	Banana	cytosol	31.78	51.83
Solyc04g014830.1.1	Tomato	mitochondrion	53.46	51.72
TraesCS5A01G414000.1	Wheat	cytosol	40.56	50.94
TraesCS5A01G409800.1	Wheat	nucleus, plastid	47.29	50.5
Bra018860.1-P	Field mustard	nucleus	46.92	47.81
GSMUA_Achr4P11050_001	Banana	nucleus	35.14	47.36
Os03t0193000-01	Rice	plastid	47.29	47.29
TraesCS5D01G419400.2	Wheat	cytosol	48.41	47.09
TraesCS4A01G039000.1	Wheat	nucleus	42.62	46.63
EER95348	Sorghum	cytosol	46.54	46.46
Zm00001d048199_P001	Maize	mitochondrion, nucleus	46.54	46.46
Os07t0583600-01	Rice	plasma membrane	47.1	46.32
Bra020715.1-P	Field mustard	cytosol, plastid	42.99	46.28
TraesCS2B01G217500.1	Wheat	cytosol	47.85	46.21
HORVU4Hr1G071670.1	Barley	cytosol	46.17	46.08
Zm00001d006701_P001	Maize	cytosol	47.66	46.03
Bra036185.1-P	Field mustard	cytosol	42.43	45.86
Zm00001d030500_P001	Maize	nucleus	46.36	45.76
TraesCS4D01G266400.1	Wheat	cytosol	45.79	45.71
EER97449	Sorghum	cytosol	46.73	45.7
HORVU2Hr1G036280.1	Barley	cytosol	47.48	45.6
TraesCS2D01G198200.1	Wheat	cytosol	47.29	45.59
GSMUA_AchrUn_...	Banana	nucleus	36.45	45.56
TraesCS2A01G189600.1	Wheat	cytosol	46.92	45.31
TraesCS4B01G266700.1	Wheat	cytosol	45.42	45.25
Zm00001d021946_P001	Maize	cytosol	46.73	44.8
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	33.08	43.38
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	25.61	41.14
HORVU5Hr1G099160.1	Barley	plastid	47.66	40.48
Bra012280.1-P	Field mustard	cytosol	37.76	36.79
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	17.94	30.28
Bra028312.1-P	Field mustard	cytosol	24.86	29.3
Bra022596.1-P	Field mustard	plastid	26.36	24.35
Bra015584.1-P	Field mustard	cytosol	18.32	22.48
Bra028391.1-P	Field mustard	nucleus	24.49	21.13
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	26.36	20.95
Bra028390.1-P	Field mustard	cytosol	27.1	20.54
Bra033813.1-P	Field mustard	nucleus	22.06	20.27
Bra031581.1-P	Field mustard	cytosol	24.49	19.61
Bra030688.1-P	Field mustard	nucleus	27.1	19.52
Bra035653.1-P	Field mustard	cytosol	24.67	18.28
Bra031580.1-P	Field mustard	cytosol	23.18	17.97

Protein Annotations

EnsemblPlants:Bra026237.1	EnsemblPlants:Bra026237.1-P	EnsemblPlantsGene:Bra026237	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_13
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002544140	UniProt:M4EBS8	MapMan:15.5.12	:	:	:

Description

AT4G17230 (E=7e-252) SCL13 | SCL13 (Scarecrow-like 13); transcription factor

Coordinates

chrA01:+:10478659..10480266

Molecular Weight (calculated)

59272.6 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.271

Length

535 amino acids

Sequence
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV HCSPQFQVID KKNKKSAFSD TTPSKESFFT LESSTASGPL PSYESPSVSI TSGRSPFSPQ ASCISDLHPS PENIYESPLS
101: GASSHVYDEA HVKNKIRELE VSLLSVDPKV EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLVEAAQAVA EGDFAAACGF IDVLEQMVSV SGTPIQRLGT
201: YMAEGLRARL QGTGGNIYRA LKCNEPTGRE LMSYMGVLYE ICPYWKFAYN AANAAILEAV AGEKRVHIID FQIAQGTQYM FLINELAKLP GGPPLLRVTG
301: VDDSQSRFAR GGGLNLVGEK LANKAQSCGV PFEFHDAIMS GCKVHREHLG VEPGFAVVVN FPYVLHHMPD ESVSVENHRD RLLRLIKSLG PKLVTLVEQE
401: SNTNTSPFLS RFVETLDYYT AMFESIDAAR PRDDKQRISA EQHCAARDIV NMIACEERER VERHEVLGKW RVRMMMAGFM GWPVSSSAAF AASEMLKGYD
501: KNYKLGENEG ALYLFWKRRP MATCSAWKPN PNQIV

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.