Factsheet for Bra018860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22807	Canola	nucleus	79.62	99.52
CDY37124	Canola	nucleus	79.62	99.52
Bra026077.1-P	Field mustard	cytosol	55.62	99.32
AT1G50600.2	Thale cress	golgi, mitochondrion	92.76	81.03
Bra015156.1-P	Field mustard	cytosol	39.43	65.09
GSMUA_Achr4P07010_001	Banana	cytosol	40.57	64.94
VIT_19s0090g01740.t01	Wine grape	cytosol	62.48	60.18
Bra036185.1-P	Field mustard	cytosol	54.86	58.18
KRH73868	Soybean	cytosol	60.0	57.8
Bra020715.1-P	Field mustard	cytosol, plastid	54.67	57.75
GSMUA_Achr4P11050_001	Banana	nucleus	43.05	56.93
KRH14274	Soybean	cytosol	59.05	56.88
TraesCS5A01G414000.1	Wheat	cytosol	45.14	55.63
KRG98562	Soybean	nucleus	57.71	55.6
Solyc07g065270.1.1	Tomato	nucleus	56.95	55.58
KRH46306	Soybean	cytosol	57.52	55.41
PGSC0003DMT400057111	Potato	nucleus	56.19	54.93
GSMUA_AchrUn_...	Banana	nucleus	44.57	54.67
TraesCS5A01G409800.1	Wheat	nucleus, plastid	52.0	54.49
Os07t0583600-01	Rice	plasma membrane	55.62	53.68
TraesCS2B01G217500.1	Wheat	cytosol	55.62	52.71
EER97449	Sorghum	cytosol	54.67	52.47
TraesCS2D01G198200.1	Wheat	cytosol	55.43	52.43
TraesCS2A01G189600.1	Wheat	cytosol	55.24	52.35
Zm00001d006701_P001	Maize	cytosol	54.67	51.81
Os03t0193000-01	Rice	plastid	52.76	51.78
HORVU2Hr1G036280.1	Barley	cytosol	54.86	51.71
Zm00001d021946_P001	Maize	cytosol	54.86	51.61
Zm00001d048199_P001	Maize	mitochondrion, nucleus	52.0	50.93
HORVU4Hr1G071670.1	Barley	cytosol	51.62	50.56
TraesCS5D01G419400.2	Wheat	cytosol	52.95	50.55
EER95348	Sorghum	cytosol	51.43	50.37
TraesCS4D01G266400.1	Wheat	cytosol	51.43	50.37
Zm00001d030500_P001	Maize	nucleus	52.0	50.37
TraesCS4B01G266700.1	Wheat	cytosol	50.86	49.72
TraesCS4A01G039000.1	Wheat	nucleus	45.9	49.28
Bra026237.1-P	Field mustard	plastid	47.81	46.92
KRH38269	Soybean	cytosol	31.24	46.46
Bra021063.1-P	Field mustard	plastid	46.67	46.23
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	34.67	44.61
HORVU5Hr1G099160.1	Barley	plastid	51.43	42.86
Bra012280.1-P	Field mustard	cytosol	38.67	36.98
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	18.48	30.6
Bra028312.1-P	Field mustard	cytosol	26.29	30.4
Bra022596.1-P	Field mustard	plastid	28.95	26.25
Bra015584.1-P	Field mustard	cytosol	20.19	24.31
Bra028391.1-P	Field mustard	nucleus	24.95	21.13
Bra033813.1-P	Field mustard	nucleus	23.24	20.96
Bra031581.1-P	Field mustard	cytosol	25.52	20.06
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	25.71	20.06
Bra028390.1-P	Field mustard	cytosol	26.86	19.97
Bra031580.1-P	Field mustard	cytosol	25.14	19.13
Bra030688.1-P	Field mustard	nucleus	27.05	19.11
Bra035653.1-P	Field mustard	cytosol	26.1	18.98

Protein Annotations

EnsemblPlants:Bra018860.1	EnsemblPlants:Bra018860.1-P	EnsemblPlantsGene:Bra018860	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000253EAE5
UniProt:M4DQR7	MapMan:15.5.12	:	:	:	:

Description

AT1G50600 (E=1e-265) SCL5 | SCL5; transcription factor

Coordinates

chrA06:+:1575361..1576938

Molecular Weight (calculated)

58460.2 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.387

Length

525 amino acids

Sequence
(BLAST)

001: MEATQKHIIQ DGSSMFYHQP SVKQMDISVQ TFDSYCTLES SSGTKSHPCP NNNITSSTTS FSSNGSPVSH SNTNNNTSHL SPDNNNSPLS GSSATNNNET
101: ELSLMLKDLE TAMMEPDLDN NSFNGYEFGQ QQQHQHRAAS SAMYRSMEMI SRGDLKGTLY ECAKAVENCD VAMTDWLISQ LQQMVSVSGE PVQRLGAYML
201: EGLVARLASS GSSIYKALRC KDPTGPELLT YMHILYEACP YFKFGYESAN GAIAEAVKNE SFVHIIDFQI SQGGQWVSLI RALGARPGGP PRVRITGIDD
301: PRSSFARQGG LELVGQRLGK LAEMCGVPFE FHGAALCCTE VEIEKLGVRN GEALAVNFPL VLHHMPDESV TVENHRDRLL RLVKRLSPNV VTLVEQEANT
401: NTAPFLPRFV ETMNHYLAVF ESIDVKLARD HKERINVEQH CLAREVVNLI ACEGVEREER HEPLGKWRSR FHMAGFKPYP LSSYVNATIK GLLESYSEKY
501: TLEERDGALY LGWKNQPLIT SCAWR

Best Arabidopsis Sequence Match ( AT1G50600.2 )
(BLAST)

001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.