Factsheet for Bra017915.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50240	Canola	cytosol	99.02	70.14
GSMUA_Achr6P11780_001	Banana	cytosol	58.09	69.3
Bra012280.1-P	Field mustard	cytosol	87.5	65.03
AT1G21450.1	Thale cress	nucleus	88.24	60.71
VIT_04s0044g01370.t01	Wine grape	nucleus	70.34	50.53
KRH15917	Soybean	cytosol	72.79	50.25
KRH18097	Soybean	cytosol	72.55	50.08
Bra026077.1-P	Field mustard	cytosol	35.78	49.66
Solyc04g064550.1.1	Tomato	mitochondrion	68.38	49.56
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	67.65	49.37
KRH53364	Soybean	cytosol	72.06	49.0
GSMUA_Achr10P...	Banana	cytosol	66.18	48.91
KRH64568	Soybean	cytosol	70.83	48.49
Bra015156.1-P	Field mustard	cytosol	37.75	48.43
Os01t0881500-01	Rice	cytosol	62.99	46.47
GSMUA_Achr3P02410_001	Banana	nucleus	65.69	45.66
TraesCS3A01G408000.1	Wheat	cytosol	61.76	45.65
HORVU3Hr1G091250.1	Barley	cytosol	61.76	45.65
TraesCS3B01G441600.1	Wheat	cytosol	61.76	45.65
TraesCS3D01G403100.1	Wheat	cytosol	61.76	45.65
KXG33821	Sorghum	cytosol	62.5	44.82
EES18257	Sorghum	cytosol	61.03	44.23
Zm00001d038225_P001	Maize	cytosol	58.58	42.6
Bra020715.1-P	Field mustard	cytosol, plastid	48.04	39.44
Bra036185.1-P	Field mustard	cytosol	47.55	39.19
Bra018860.1-P	Field mustard	nucleus	44.61	34.67
Bra026237.1-P	Field mustard	plastid	43.38	33.08
Bra021063.1-P	Field mustard	plastid	42.65	32.83
Bra028312.1-P	Field mustard	cytosol	36.27	32.6
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	21.57	27.76
Bra022596.1-P	Field mustard	plastid	35.54	25.04
Bra015584.1-P	Field mustard	cytosol	20.83	19.5
Bra028391.1-P	Field mustard	nucleus	27.94	18.39
Bra033813.1-P	Field mustard	nucleus	24.26	17.01
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	27.7	16.79
Bra031581.1-P	Field mustard	cytosol	26.96	16.47
Bra030688.1-P	Field mustard	nucleus	28.92	15.88
Bra028390.1-P	Field mustard	cytosol	26.96	15.58
Bra031580.1-P	Field mustard	cytosol	26.23	15.51
Bra035653.1-P	Field mustard	cytosol	26.96	15.24

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra017915	EnsemblPlants:Bra017915.1	EnsemblPlants:Bra017915.1-P	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
UniProt:M4DN28	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1
InterPro:TF_GRAS	UniParc:UPI000253F0C6	SEG:seg	:	:	:

Description

AT1G21450 (E=9e-196) SCL1 | SCL1 (SCARECROW-LIKE 1); transcription factor

Coordinates

chrA06:+:8814285..8815511

Molecular Weight (calculated)

45922.1 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.299

Length

408 amino acids

Sequence
(BLAST)

001: MEIDNEWSPK ESSSEDSNSH ASSKEVISQS TTTTTPKQIL ISCAHALSEG KSEEALSMVN ELRQIVSIQG DPSQRIAAYM VEGLAARMAA SGKFLYKALK
101: CKEPPSDERL AAMQVLFEVC PCFKFGFLAA NDAIIDSIRG EEEVHIIDFD INQGNQYMTL IKTIADLPVR GRPRLRLTGV DDPESVQRSV GGLRIIGLRL
201: EQLAKDHGVS FTFKAVASKT NIVSPSTLGC KPGEALIVNF AFQLHHMPDE SVTTVNQRDE LLHMVKSLNP KLVTVVEQDV NTNTSPFFPR FMEAYEYYSA
301: VFDSLDMTLP RESQERMNVE RQCLARDIVN IVACEGEERI ERYEVAGKWR ARMMMAGFSP RPMSGRVRSN IETLIKRDYC SKYKVKEEMG ELHFCWEEKS
401: LIVASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.