Factsheet for GSMUA_Achr10P17290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11780_001	Banana	cytosol	54.89	88.6
GSMUA_Achr3P02410_001	Banana	nucleus	82.61	77.68
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	48.91	66.18
VIT_04s0044g01370.t01	Wine grape	nucleus	67.39	65.49
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	63.59	62.12
Os01t0881500-01	Rice	cytosol	61.41	61.3
TraesCS3A01G408000.1	Wheat	cytosol	60.87	60.87
TraesCS3D01G403100.1	Wheat	cytosol	60.87	60.87
TraesCS3B01G441600.1	Wheat	cytosol	60.87	60.87
HORVU3Hr1G091250.1	Barley	cytosol	60.69	60.69
KXG33821	Sorghum	cytosol	61.78	59.93
EES18257	Sorghum	cytosol	59.6	58.44
KRH64568	Soybean	cytosol	62.32	57.72
KRH53364	Soybean	cytosol	62.68	57.67
KRH18097	Soybean	cytosol	61.05	57.02
CDY61060	Canola	cytosol	55.25	56.59
KRH15917	Soybean	cytosol	60.33	56.35
GSMUA_Achr8P03610_001	Banana	cytosol	14.67	56.25
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	56.88	56.17
CDY00377	Canola	cytosol	55.62	55.82
Bra012280.1-P	Field mustard	cytosol	55.43	55.74
Solyc04g064550.1.1	Tomato	mitochondrion	56.7	55.59
Zm00001d038225_P001	Maize	cytosol	56.34	55.44
CDY68224	Canola	cytosol	56.7	54.34
CDY50240	Canola	cytosol	55.8	53.47
AT1G21450.1	Thale cress	nucleus	55.8	51.94
GSMUA_Achr4P07010_001	Banana	cytosol	29.71	50.0
GSMUA_Achr4P11050_001	Banana	nucleus	31.34	43.58
GSMUA_AchrUn_...	Banana	nucleus	32.25	41.59
GSMUA_Achr6P24310_001	Banana	cytosol	36.96	38.13
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	30.62	32.5
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	32.79	32.21
GSMUA_AchrUn_...	Banana	plastid	33.88	31.97
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	32.97	31.16
GSMUA_Achr9P18770_001	Banana	cytosol	32.07	31.11
GSMUA_Achr1P03650_001	Banana	mitochondrion	30.98	30.0
GSMUA_Achr4P24960_001	Banana	cytosol	24.46	27.84
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	29.17	27.62
GSMUA_Achr5P08320_001	Banana	cytosol	16.67	20.49
GSMUA_Achr10P...	Banana	nucleus	16.3	20.36
GSMUA_Achr7P15080_001	Banana	cytosol	20.83	19.23
GSMUA_Achr10P...	Banana	cytosol	20.83	19.2
GSMUA_Achr8P02550_001	Banana	nucleus	13.41	18.88
GSMUA_Achr6P34090_001	Banana	nucleus	20.83	18.79
GSMUA_AchrUn_...	Banana	cytosol	17.57	14.72

Protein Annotations

EnsemblPlants:GSMUA_Achr10P17290_001	EnsemblPlants:GSMUA_Achr10T17290_001	EnsemblPlantsGene:GSMUA_Achr10G17290_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_1
InterPro:TF_GRAS	ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985
SEG:seg	UniParc:UPI0002960671	UniProt:M0RJ04	MapMan:15.5.12	:	:

Description

Scarecrow-like protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17290_001]

Coordinates

chr10:+:24588776..24591178

Molecular Weight (calculated)

61510.9 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.284

Length

552 amino acids

Sequence
(BLAST)

001: MSVIRSADSS TAYGESNIYT RKGGGDSSAI SRQILSADEQ MYTYRPTSYH SGFYSQQYVT NASSETVHAD PFHMSGSSIP RRYLQVSSAP YQLMANIHSS
101: IISENPYKID YGEDEIRLKL RELEQALLND NDEDLVDSDQ VMGIEDDWAE PIKDLLLPSS PKESSADSSV SCVGSNREPR TPKHLLFDCA AAISQSSMEE
201: AQAIITELRQ MVSIQGDPPQ RLAAYMVEGL AARIASSGRG LYKALKCKEP PTSDRLSAMQ ILFEVCPCFK FGYMAANYII VEAVKDEAKV HIIDFDLNQG
301: SQYINLIQTL STWAGKRPQL RISGVDDPES VQRAVGGLKI IGHRLEKLAE DLGVPFEFRA IAAKTGDITP EMLDCRPGEA LVVNFAFQLH HMPDESVSTV
401: NQRDQLLRMV KGLGPKLVTI VEQDMNTNTA PFFPRFVEVY NYYSAVFDSL DATLPRESTD RMNVERQCLA RDIVNIVACE GADRIERYEV AGKWRARMTM
501: AGFVSCPFSA NVNGSIQALL KSYCDRYTIK EEIGALYFGW EDKNLVVASA WK

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.