CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53364	Soybean	cytosol	95.3	94.67
KRH18097	Soybean	cytosol	77.35	78.0
KRH15917	Soybean	cytosol	76.01	76.65
GSMUA_Achr6P11780_001	Banana	cytosol	43.46	75.73
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	48.49	70.83
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	64.26	67.79
CDY61060	Canola	cytosol	56.71	62.71
CDY00377	Canola	cytosol	57.55	62.36
GSMUA_Achr10P...	Banana	cytosol	57.72	62.32
CDY50240	Canola	cytosol	60.07	62.15
CDY68224	Canola	cytosol	60.07	62.15
Bra012280.1-P	Field mustard	cytosol	57.21	62.11
AT1G21450.1	Thale cress	nucleus	59.56	59.87
GSMUA_Achr3P02410_001	Banana	nucleus	58.22	59.11
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	55.37	59.03
Solyc04g064550.1.1	Tomato	mitochondrion	55.03	58.26
Os01t0881500-01	Rice	cytosol	53.02	57.14
HORVU3Hr1G091250.1	Barley	cytosol	52.35	56.52
TraesCS3D01G403100.1	Wheat	cytosol	52.35	56.52
TraesCS3B01G441600.1	Wheat	cytosol	52.35	56.52
TraesCS3A01G408000.1	Wheat	cytosol	52.35	56.52
KXG33821	Sorghum	cytosol	52.18	54.66
EES18257	Sorghum	cytosol	51.01	54.0
Zm00001d038225_P001	Maize	cytosol	49.16	52.23
KRH14104	Soybean	cytosol	39.6	43.3
KRH74015	Soybean	cytosol	39.09	43.07
KRH11548	Soybean	nucleus	36.24	39.13
KRH36572	Soybean	cytosol	35.57	38.69
KRH14274	Soybean	cytosol	35.23	38.53
KRH73868	Soybean	cytosol	35.23	38.53
KRH22210	Soybean	cytosol, plastid	37.08	38.3
KRH27129	Soybean	plastid	35.74	37.97
KRH55599	Soybean	plastid	35.91	37.68
KRG98562	Soybean	nucleus	34.4	37.61
KRH51175	Soybean	cytosol	34.06	37.45
KRH25905	Soybean	cytosol, plastid	35.4	37.15
KRH46306	Soybean	cytosol	33.89	37.06
KRH01979	Soybean	cytosol	33.56	36.7
KRH38269	Soybean	cytosol	17.95	30.31
KRH35251	Soybean	plastid	29.53	29.83
KRG91573	Soybean	plastid	29.53	29.63
KRH38397	Soybean	plastid	24.5	27.04
KRH08880	Soybean	plastid	29.36	26.64
KRH24780	Soybean	cytosol	23.32	21.06
KRH10240	Soybean	cytosol	21.31	20.96
KRH29773	Soybean	cytosol	21.48	20.85
KRH23089	Soybean	cytosol	22.48	20.81
KRH10243	Soybean	nucleus	23.15	20.75
KRH29771	Soybean	cytosol	23.66	20.74
KRH29775	Soybean	nucleus	23.32	20.65
KRH29774	Soybean	cytosol	21.81	20.6
KRH23094	Soybean	cytosol	18.62	20.07
KRH23090	Soybean	vacuole	20.64	19.81
KRH24773	Soybean	nucleus	22.82	19.8
KRH24778	Soybean	nucleus	22.32	19.67
KRH10241	Soybean	cytosol, nucleus, peroxisome	22.48	19.48
KRH24775	Soybean	cytosol	22.15	19.41
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	23.99	19.25
KRH23095	Soybean	cytosol	21.14	19.18
KRH29779	Soybean	cytosol	23.15	18.6
KRH49113	Soybean	cytosol	22.65	18.39
KRH65839	Soybean	cytosol, plastid	22.32	18.22
KRG99969	Soybean	cytosol	22.48	18.18

Protein Annotations

EntrezGene:100788103	MapMan:15.5.12	EMBL:ACUP02002768	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G242100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	UniProt:K7KM36
ProteinID:KRH64567.1	EnsemblPlants:KRH64568	ProteinID:KRH64568	ProteinID:KRH64568.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI000233A20F	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:51000785..51004632

Molecular Weight (calculated)

66488.0 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.423

Length

596 amino acids

Sequence
(BLAST)

001: MSLVRSADLA PTSYENAKLF SLKGTDVRPG LSSQIFGPDK HRSTYMTDTY PSESYEKYFH DSQTEEIIEP SSSSISGSSI HPDVASSYQI RAISGASMVA
101: NNPFDSSFMS TRHRDAYQSN SGSDLMENGS LDSRNDDGLM RLKLQALERA LLDDSDAEEE EEEEEDIFEA AQSMEIDPDI AEWADSMQNM LLHDSPKETS
201: SSDSNISSIS STKEISQTSQ NPRKLLYECA IALSEGNEVE GSSMINNLRQ MVSIQGEPSQ RIAAYMVEGL AARLAESGKS IYKALRCKEP PTSDRLAAMQ
301: ILFEVCPCFK FGFIAANNTI TEAVKDDMKI HIIDFDINQG SQYINLIQTL ASRSSKPPHV RLTGVDDPES VQRSVGGLQN IGQRLEKLAE ALGLPFEFRA
401: VASRTSIVTP SMLDCSPDEA LVVNFAFQLH HMPDESVSTA NERDQLLRLV KSLNPKLVTV VEQDVNTNTT PFLPRFVEAY NYYSAVFESL DATLPRESQD
501: RMNVERQCLA RDIVNVVACE GEDRIERYEV AGKWRARMTM AGFTSSPMST NVTDEIRQLI KVVYCDRYKI KEEMGALHFG WEDKSLIVAS AWKLPR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.