CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	70.14	99.02
CDY68224	Canola	cytosol	97.92	97.92
CDY00377	Canola	cytosol	82.81	86.73
CDY61060	Canola	cytosol	79.69	85.16
AT1G21450.1	Thale cress	nucleus	85.94	83.47
GSMUA_Achr6P11780_001	Banana	cytosol	41.32	69.59
KRH15917	Soybean	cytosol	62.15	60.58
KRH18097	Soybean	cytosol	61.98	60.41
KRH64568	Soybean	cytosol	62.15	60.07
KRH53364	Soybean	cytosol	61.81	59.33
VIT_04s0044g01370.t01	Wine grape	nucleus	56.6	57.39
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	55.38	57.07
Solyc04g064550.1.1	Tomato	mitochondrion	55.73	57.02
GSMUA_Achr10P...	Banana	cytosol	53.47	55.8
Os01t0881500-01	Rice	cytosol	50.87	52.98
TraesCS3B01G441600.1	Wheat	cytosol	50.52	52.72
TraesCS3D01G403100.1	Wheat	cytosol	50.52	52.72
HORVU3Hr1G091250.1	Barley	cytosol	50.35	52.54
TraesCS3A01G408000.1	Wheat	cytosol	50.35	52.54
GSMUA_Achr3P02410_001	Banana	nucleus	53.3	52.3
KXG33821	Sorghum	cytosol	51.22	51.85
EES18257	Sorghum	cytosol	49.31	50.44
Zm00001d038225_P001	Maize	cytosol	47.57	48.84
CDY00883	Canola	cytosol	32.12	45.68
CDY71156	Canola	cytosol, plastid	29.34	43.33
CDY05700	Canola	cytosol, plastid	36.63	42.45
CDY71174	Canola	cytosol, plastid	36.63	42.45
CDX86324	Canola	cytosol, nucleus, plastid	36.46	42.25
CDY07309	Canola	cytosol	17.53	42.08
CDY54511	Canola	cytosol, nucleus, plastid	36.28	42.05
CDY22807	Canola	nucleus	30.56	41.9
CDY37124	Canola	nucleus	30.56	41.9
CDY00074	Canola	cytosol, plastid	36.11	41.85
CDY19966	Canola	cytosol	35.76	41.7
CDY35589	Canola	cytosol	35.59	38.61
CDY42968	Canola	cytosol	35.59	38.32
CDY58168	Canola	plastid	34.55	37.55
CDY50128	Canola	cytosol, plastid	34.72	37.52
CDY27821	Canola	cytosol	27.26	35.36
CDY00533	Canola	cytosol	27.26	35.2
CDY27063	Canola	cytosol, plastid	27.78	27.78
CDX91655	Canola	cytosol	27.78	27.21
CDX80265	Canola	endoplasmic reticulum, golgi	14.93	27.13
CDX68389	Canola	cytosol	3.82	25.88
CDY39530	Canola	cytosol	22.74	21.16
CDY47877	Canola	nucleus	22.57	21.04
CDY71578	Canola	nucleus, plastid	18.75	20.73
CDY06266	Canola	cytosol	21.7	19.78
CDY33040	Canola	nucleus	20.14	19.43
CDX79750	Canola	peroxisome	22.4	19.14
CDY07777	Canola	cytosol, nucleus, peroxisome	22.22	19.02
CDX86475	Canola	nucleus	23.09	18.73
CDY47878	Canola	nucleus	21.88	18.23
CDY06265	Canola	cytosol	21.53	17.97
CDY09912	Canola	cytosol	21.7	17.86
CDX82987	Canola	nucleus	18.58	17.8
CDY31749	Canola	cytosol	22.22	17.63
CDY15616	Canola	nucleus	21.7	17.48
CDX77228	Canola	cytosol	19.97	17.11
CDY09911	Canola	nucleus	16.49	16.27
CDX68388	Canola	cytosol	11.28	15.7

Protein Annotations

MapMan:15.5.12	GO:A0A078IH38	UniProt:A0A078IH38	EnsemblPlants:CDY50240	ProteinID:CDY50240	ProteinID:CDY50240.1
ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00096219001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI0004EE9C8B	SEG:seg

Description

BnaA06g15170DBnaA06g15170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH38]

Coordinates

chrLK032892:+:45157..47681

Molecular Weight (calculated)

64371.0 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.398

Length

576 amino acids

Sequence
(BLAST)

001: MSLVRSAELS AAAAYRNPKL YSLNENGYNT GGGTSVEMFD PDRSKNTCLT DDSYPSQSYE KYFLDSPTDE FAQQQHPVGS GGASVSSFGS LESFPYQSRP
101: VLGCSMEYQL PFDSTSTSSM SLFGGYQVAT QSPSMEFDDE QMRSKIQELE RALLDDEDDD DKMIGIDQLM EIDNEWSPKE SSSEDSNSHA SSKEVISQST
201: TTTPKQILIS CAHALSEGKS EEALSMVNEL RQIVSIQGDP SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND
301: AIIDSIRGEE EVHIIDFDIN QGNQYMTLIK TIADLPVKGR PRLRLTGVDD PESVQRSVGG LRIIGLRLEQ LAKDHGVSFT FKAVASKTNI VSPSTLGCKP
401: GEALIVNFAF QLHHMPDESV TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE SQERMNVERQ CLARDIVNIV
501: ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIE SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.