Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47877 | Canola | nucleus | 94.18 | 94.34 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 80.45 | 79.05 |
| CDY06266 | Canola | cytosol | 61.23 | 59.97 |
| CDY06265 | Canola | cytosol | 64.3 | 57.68 |
| CDY09912 | Canola | cytosol | 63.17 | 55.86 |
| CDX68389 | Canola | cytosol | 7.43 | 54.12 |
| CDY09911 | Canola | nucleus | 50.73 | 53.77 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 25.2 | 49.21 |
| PGSC0003DMT400005480 | Potato | cytosol | 37.96 | 48.25 |
| KRH29773 | Soybean | cytosol | 44.1 | 44.46 |
| CDY71578 | Canola | nucleus, plastid | 36.67 | 43.57 |
| GSMUA_Achr10P... | Banana | nucleus | 31.02 | 43.44 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 31.83 | 43.2 |
| KRH24778 | Soybean | nucleus | 46.37 | 42.46 |
| KRH29775 | Soybean | nucleus | 45.88 | 42.2 |
| KRH29774 | Soybean | cytosol | 42.81 | 42.0 |
| KRH23091 | Soybean | endoplasmic reticulum, plasma membrane | 49.6 | 41.32 |
| Solyc06g076280.1.1 | Tomato | cytosol | 49.76 | 41.18 |
| PGSC0003DMT400077972 | Potato | cytosol | 49.43 | 40.69 |
| KRH10241 | Soybean | cytosol, nucleus, peroxisome | 45.07 | 40.55 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 26.98 | 40.44 |
| KRH24775 | Soybean | cytosol | 44.26 | 40.29 |
| CDX86475 | Canola | nucleus | 46.2 | 40.28 |
| GSMUA_Achr10P... | Banana | cytosol | 38.45 | 39.73 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 39.74 | 38.68 |
| CDY47878 | Canola | nucleus | 43.13 | 38.64 |
| CDY15616 | Canola | nucleus | 44.26 | 38.32 |
| KXG38103 | Sorghum | cytosol | 38.45 | 38.02 |
| Zm00001d034664_P001 | Maize | plastid | 34.25 | 37.92 |
| CDX82987 | Canola | nucleus | 36.35 | 37.44 |
| CDY33040 | Canola | nucleus | 35.7 | 37.02 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 35.7 | 36.96 |
| KXG21080 | Sorghum | cytosol | 37.32 | 36.9 |
| KXG21079 | Sorghum | cytosol | 37.0 | 36.76 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 23.26 | 36.73 |
| Zm00001d011070_P001 | Maize | cytosol | 37.16 | 36.68 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.96 | 36.49 |
| Zm00001d035671_P001 | Maize | cytosol | 36.83 | 36.42 |
| Os03t0690600-03 | Rice | cytosol | 42.97 | 36.39 |
| OQU92829 | Sorghum | cytosol | 43.13 | 36.38 |
| Zm00001d028603_P001 | Maize | cytosol | 43.13 | 36.38 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 35.86 | 36.27 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 38.45 | 36.23 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 38.45 | 36.23 |
| CDX79750 | Canola | peroxisome | 39.42 | 36.2 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 39.26 | 36.11 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 37.96 | 35.88 |
| CDY31749 | Canola | cytosol | 41.36 | 35.26 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 33.6 | 34.9 |
| KXG37250 | Sorghum | cytosol | 36.67 | 34.87 |
| CDX77228 | Canola | cytosol | 37.8 | 34.82 |
| CDX68388 | Canola | cytosol | 23.1 | 34.54 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 41.84 | 33.46 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 41.84 | 33.38 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 41.68 | 33.25 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 41.52 | 32.66 |
| Zm00001d047813_P002 | Maize | nucleus | 42.81 | 31.97 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 35.54 | 31.88 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 35.86 | 31.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.6 | 31.56 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 35.86 | 31.53 |
| OQU91407 | Sorghum | nucleus | 34.57 | 31.2 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 35.86 | 31.14 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 35.38 | 31.02 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 36.19 | 30.98 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 35.86 | 30.88 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 35.86 | 30.75 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 35.54 | 30.73 |
| KXG38064 | Sorghum | nucleus | 35.7 | 30.69 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 35.38 | 30.63 |
| EER91260 | Sorghum | nucleus | 35.54 | 30.51 |
| Zm00001d033166_P001 | Maize | nucleus | 35.7 | 30.19 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 35.06 | 30.1 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 35.22 | 30.07 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 35.22 | 29.95 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 32.63 | 29.88 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 34.73 | 29.82 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 34.57 | 29.64 |
| Zm00001d035670_P001 | Maize | cytosol | 34.73 | 29.61 |
| OQU91406 | Sorghum | nucleus | 35.7 | 29.55 |
| EES18882 | Sorghum | cytosol | 34.57 | 29.2 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 34.25 | 29.08 |
| EES18880 | Sorghum | cytosol | 34.57 | 28.88 |
| CDY00883 | Canola | cytosol | 18.58 | 28.4 |
| CDY07309 | Canola | cytosol | 10.82 | 27.92 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 32.63 | 26.68 |
| CDY71156 | Canola | cytosol, plastid | 16.64 | 26.41 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 20.84 | 25.96 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 20.84 | 25.96 |
| CDY71174 | Canola | cytosol, plastid | 20.84 | 25.96 |
| CDY05700 | Canola | cytosol, plastid | 20.68 | 25.75 |
| CDY19966 | Canola | cytosol | 20.36 | 25.51 |
| CDY00074 | Canola | cytosol, plastid | 20.36 | 25.35 |
| CDY22807 | Canola | nucleus | 17.12 | 25.24 |
| CDY37124 | Canola | nucleus | 17.12 | 25.24 |
| CDY42968 | Canola | cytosol | 21.49 | 24.86 |
| CDY35589 | Canola | cytosol | 21.32 | 24.86 |
| CDY27821 | Canola | cytosol | 17.77 | 24.77 |
| CDY50128 | Canola | cytosol, plastid | 21.32 | 24.77 |
| CDY58168 | Canola | plastid | 21.16 | 24.72 |
| CDY00533 | Canola | cytosol | 17.45 | 24.22 |
| CDY61060 | Canola | cytosol | 20.36 | 23.38 |
| CDY00377 | Canola | cytosol | 20.36 | 22.91 |
| CDY50240 | Canola | cytosol | 21.16 | 22.74 |
| CDY68224 | Canola | cytosol | 21.16 | 22.74 |
| CDY27063 | Canola | cytosol, plastid | 19.55 | 21.01 |
| CDX91655 | Canola | cytosol | 19.39 | 20.41 |
Protein Annotations
| EnsemblPlants:CDY39530 | EnsemblPlantsGene:GSBRNA2T00068063001 | GO:A0A078HM60 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF129 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY39530 | ProteinID:CDY39530.1 |
| SEG:seg | UniParc:UPI0004EF2DA1 | UniProt:A0A078HM60 | MapMan:15.5.12 | : | : |
Description
BnaC04g15290DBnaC04g15290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM60]
Coordinates
chrLK032450:+:269925..271784
Molecular Weight (calculated)
71466.8 Da
IEP (calculated)
5.641
GRAVY (calculated)
-0.493
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNISLNGF EYLDESLFLD SSPSFDFDRN PSFLADPTEE PDENDSSTTL LRYVTQILME ESVGDKQSMF YDSLALRKTE EMLQQVITDS KAHSFTTSDA
101: SGSIGSSSSS LPVNEIVVKS MFSDAESDLQ FRRGLEEARK FLPNSDQWVF NLERPVEVIK EEMGLRVKKS HEREFLDLEE VRSSKQSATN VEDVEVTDMF
201: DKVLLLDGQC DPQTLSENKH QQTKKKKTKT KKKSQVIDFR TLLTHCAQAI STGDKTTALD LLLQIRQDSS PIGDASQRLA HCFANALEAR LQGTTGPVIQ
301: TYYNAITSLK ETASDILKAY RVYLSSSPFV TLMYFFSFRM ILDAAKDAEV LHVVDFGILY GFQWPMFIQY MSGRKDVPRK LRITGIELPQ RGLRPAERIE
401: ETGRRLSEYC KRFNVPFEYK AIASQHWETI RLDEFDIRPG EVLAVNAGLR LKTLQDETGG EETCPRDAVL KLIRKMNPDV FVHAIVNGSF NAPFFISRFK
501: EAVYHYYALF DMFDSTLPRD NQERIRFERE FYGREAMNVI ACEEGDRVER PETYRQWQVR MVRAGFKQKP VRDEIVELFR EKLKKWRYHK DFVVDENSKW
601: LLQGWKGRTL YASSCWVPA
101: SGSIGSSSSS LPVNEIVVKS MFSDAESDLQ FRRGLEEARK FLPNSDQWVF NLERPVEVIK EEMGLRVKKS HEREFLDLEE VRSSKQSATN VEDVEVTDMF
201: DKVLLLDGQC DPQTLSENKH QQTKKKKTKT KKKSQVIDFR TLLTHCAQAI STGDKTTALD LLLQIRQDSS PIGDASQRLA HCFANALEAR LQGTTGPVIQ
301: TYYNAITSLK ETASDILKAY RVYLSSSPFV TLMYFFSFRM ILDAAKDAEV LHVVDFGILY GFQWPMFIQY MSGRKDVPRK LRITGIELPQ RGLRPAERIE
401: ETGRRLSEYC KRFNVPFEYK AIASQHWETI RLDEFDIRPG EVLAVNAGLR LKTLQDETGG EETCPRDAVL KLIRKMNPDV FVHAIVNGSF NAPFFISRFK
501: EAVYHYYALF DMFDSTLPRD NQERIRFERE FYGREAMNVI ACEEGDRVER PETYRQWQVR MVRAGFKQKP VRDEIVELFR EKLKKWRYHK DFVVDENSKW
601: LLQGWKGRTL YASSCWVPA
001: MDPNFSESLN GFEYFDGNPN LLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD SLALRKTEEM LQQVITDSQN QSFSPADSLI TNSWDASGSI
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
Arabidopsis Description
SCL34Scarecrow-like protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P0C884]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.