Factsheet for Solyc06g076280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077972	Potato	cytosol	97.46	96.94
Solyc04g011630.1.1	Tomato	cytosol	13.9	61.18
GSMUA_Achr10P...	Banana	nucleus	32.09	54.3
KRH29773	Soybean	cytosol	43.18	52.61
KRH29775	Soybean	nucleus	46.12	51.26
KRH29774	Soybean	cytosol	42.51	50.4
CDY39530	Canola	cytosol	41.18	49.76
CDY47877	Canola	nucleus	41.04	49.68
AT2G29065.1	Thale cress	cytosol, nucleus, plastid	41.71	49.52
Bra028391.1-P	Field mustard	nucleus	41.04	49.52
GSMUA_Achr10P...	Banana	cytosol	39.44	49.25
KRH24775	Soybean	cytosol	44.38	48.82
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	47.86	48.18
GSMUA_Achr8P02550_001	Banana	nucleus	25.0	47.7
KRH10241	Soybean	cytosol, nucleus, peroxisome	43.85	47.67
KRH24778	Soybean	nucleus	42.91	47.49
Bra015584.1-P	Field mustard	cytosol	27.54	47.25
CDY06266	Canola	cytosol	39.3	46.52
GSMUA_Achr7P15080_001	Banana	cytosol	37.17	46.49
AT1G07520.3	Thale cress	cytosol	42.25	45.4
Solyc09g010920.1.1	Tomato	cytosol	46.12	45.34
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	38.37	45.13
Bra031581.1-P	Field mustard	cytosol	39.97	44.76
Zm00001d034664_P001	Maize	plastid	33.42	44.72
Os03t0690600-03	Rice	cytosol	43.58	44.6
TraesCS1B01G037500.1	Wheat	cytosol	24.6	44.55
Zm00001d028603_P001	Maize	cytosol	43.45	44.28
OQU92829	Sorghum	cytosol	43.32	44.14
CDY06265	Canola	cytosol	40.51	43.91
Solyc10g086530.1.1	Tomato	cytosol	44.65	43.89
GSMUA_Achr6P34090_001	Banana	nucleus	35.7	43.63
Bra031580.1-P	Field mustard	cytosol	40.24	43.62
Solyc05g053090.1.1	Tomato	cytosol	43.05	43.34
Solyc01g100200.2.1	Tomato	nucleus	38.37	43.09
KXG37250	Sorghum	cytosol	37.17	42.7
CDY09912	Canola	cytosol	39.84	42.57
Solyc06g082530.1.1	Tomato	cytosol	37.03	42.42
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	36.5	42.39
HORVU3Hr1G012520.1	Barley	cytosol	25.8	42.32
TraesCS5D01G494900.1	Wheat	cytosol	37.03	42.16
TraesCS5B01G494500.1	Wheat	cytosol	36.9	42.01
KXG38103	Sorghum	cytosol	35.03	41.85
TraesCS5A01G481300.1	Wheat	cytosol	36.5	41.68
Zm00001d011070_P001	Maize	cytosol	34.09	40.67
KXG21079	Sorghum	cytosol	33.82	40.61
TraesCS5A01G139000.1	Wheat	cytosol, plastid	42.11	40.59
TraesCS5D01G152700.1	Wheat	cytosol, plastid	41.98	40.57
TraesCS5B01G138100.1	Wheat	cytosol, plastid	41.98	40.46
KXG21080	Sorghum	cytosol	33.69	40.26
CDY09911	Canola	nucleus	31.15	39.9
Zm00001d035671_P001	Maize	cytosol	33.29	39.78
HORVU5Hr1G045020.29	Barley	cytosol	41.84	39.77
Zm00001d047813_P002	Maize	nucleus	43.18	38.96
GSMUA_AchrUn_...	Banana	cytosol	34.22	38.85
HORVU3Hr1G012550.6	Barley	cytosol	29.28	36.74
TraesCS1B01G037300.1	Wheat	cytosol	33.56	35.65
OQU91407	Sorghum	nucleus	32.35	35.28
TraesCS1D01G030900.1	Wheat	cytosol	33.16	34.78
HORVU1Hr1G004440.1	Barley	cytosol	33.29	34.63
TraesCS1D01G030800.1	Wheat	cytosol	32.35	34.52
Zm00001d035670_P001	Maize	cytosol	33.42	34.44
TraesCS1A01G030300.1	Wheat	cytosol	32.35	34.28
TraesCS1D01G031200.1	Wheat	cytosol	33.16	34.02
EES18882	Sorghum	cytosol	33.29	33.97
TraesCS1A01G030200.1	Wheat	cytosol	32.62	33.84
EER91260	Sorghum	nucleus	32.49	33.7
TraesCS1D01G031000.1	Wheat	cytosol	32.62	33.66
OQU91406	Sorghum	nucleus	33.56	33.56
TraesCS3D01G067700.1	Wheat	cytosol	32.35	33.52
TraesCS3D01G067900.1	Wheat	nucleus	30.75	33.33
KXG38064	Sorghum	nucleus	32.09	33.33
EES18880	Sorghum	cytosol	32.89	33.2
TraesCS1B01G037400.1	Wheat	cytosol	31.82	32.92
TraesCS3B01G081000.1	Wheat	cytosol	31.95	32.83
TraesCS3D01G067800.1	Wheat	nucleus	29.55	32.69
TraesCS3A01G067900.1	Wheat	cytosol	31.42	32.55
Solyc06g035620.2.1	Tomato	cytosol	14.17	32.52
TraesCS3B01G080900.1	Wheat	nucleus	31.28	32.45
TraesCS3A01G068000.1	Wheat	nucleus	30.88	32.26
TraesCS3B01G081100.1	Wheat	nucleus	30.75	32.17
Zm00001d033166_P001	Maize	nucleus	31.42	32.1
TraesCS1B01G037200.1	Wheat	nucleus	31.28	30.91
Solyc07g047950.1.1	Tomato	mitochondrion	19.92	27.34
Solyc04g014830.1.1	Tomato	mitochondrion	20.19	27.31
Solyc11g012510.1.1	Tomato	mitochondrion	19.39	26.75
Solyc07g065270.1.1	Tomato	nucleus	19.12	26.58
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	19.25	24.7
Solyc12g005340.1.1	Tomato	cytosol	18.18	24.37
Solyc04g064550.1.1	Tomato	mitochondrion	17.11	22.74
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	8.82	19.82
Solyc06g036170.1.1	Tomato	nucleus	14.97	18.73
Solyc03g025170.1.1	Tomato	nucleus	15.51	18.38

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4C9Y8	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF129
EnsemblPlantsGene:Solyc06g076280.1	EnsemblPlants:Solyc06g076280.1.1	InterPro:TF_GRAS	UniParc:UPI000276710B	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:47399479..47401725

Molecular Weight (calculated)

84527.4 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.493

Length

748 amino acids

Sequence
(BLAST)

001: MDPRFIPLSD PVNTFEFEDQ INLSSYEGSL NPPHNYNDDY VAFGVPYTAP SVDIGNFAPS SNVSSEVDSP DDHDSDFLFK YLNQILMEEN IEDKPSMFHD
101: PLALKAAEKS LYEALGKSYP PSPYHVDHQL ESPSPDSIFQ TSSDHSTSSS NAHSNSMDPH WIVDPGESSL SLPVESHPSE YSIQPLMQSN SERSHGSLNN
201: INNLNVHMDS FLNPNALSNM FTDRESILQF KRGVEEANKF LPNVSQFVVD LDKYTFPPKV EEVTKEAVVK VEKDERNHSP NGTKGRKHQY PEDSDFEDER
301: SNKQSAIYVE EEAELSEMFD RVLLCTDKGE TICGDVKCEM PVDNSLDQNG QAHGSNGGNT RAKKQGTKNE AVDLRTLLVS CAQSVAADDR RTAYEQLKQI
401: RQHCSSIGDA YQRLASVFAD GLEARLAGTG TQIYAALAPK KITAAEKLKA YQVYLSACPF KKISIFFANK MIFHTASNAR TLHLIDFGIL YGFQWPILIQ
501: LLSEIPDGPP KLRITGIDLP QPGFRPAESL EQTGSRLAKY CERFKVPFEY NAIATQNWEN IKLEDLKLAS GETVAVNCLF RFKNLLDETV MLDSPRDAVL
601: GLIRKMNPDI FVQAVINGSY SAPFFVTRFR EALFHYSTLF DMFDATLPRG DQKRLHFEQE FYRREAMNVI ACEGSERVER PETYKQWQVR NMRAGFKILP
701: LNQQLVQKLR CKVKAGYLRD FVFDEDGKWM LQGWKGRVVC ASSCWVPA

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.