Factsheet for Solyc04g014830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060553	Potato	cytosol	90.24	95.23
Solyc11g012510.1.1	Tomato	mitochondrion	71.79	73.25
VIT_00s0463g00020.t01	Wine grape	nucleus	61.48	62.39
GSMUA_Achr4P07010_001	Banana	cytosol	34.54	58.23
KRH01979	Soybean	cytosol	57.14	57.98
KRH51175	Soybean	cytosol	56.42	57.56
KRH11548	Soybean	nucleus	56.06	56.16
TraesCS5A01G414000.1	Wheat	cytosol	43.22	56.1
KRH36572	Soybean	cytosol	55.52	56.02
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	33.63	55.86
AT4G17230.1	Thale cress	cytosol	52.98	55.39
CDY35589	Canola	cytosol	52.08	54.24
CDY50128	Canola	cytosol, plastid	52.26	54.22
CDY58168	Canola	plastid	51.72	53.96
Bra021063.1-P	Field mustard	plastid	51.72	53.96
CDY42968	Canola	cytosol	51.9	53.64
Bra026237.1-P	Field mustard	plastid	51.72	53.46
Solyc06g035620.2.1	Tomato	cytosol	31.1	52.76
Solyc07g047950.1.1	Tomato	mitochondrion	51.9	52.66
TraesCS5A01G409800.1	Wheat	nucleus, plastid	47.02	51.9
GSMUA_Achr4P11050_001	Banana	nucleus	36.71	51.13
GSMUA_AchrUn_...	Banana	nucleus	39.24	50.7
Os03t0193000-01	Rice	plastid	48.82	50.47
Solyc07g065270.1.1	Tomato	nucleus	49.01	50.37
EER95348	Sorghum	cytosol	48.64	50.19
Zm00001d048199_P001	Maize	mitochondrion, nucleus	48.46	50.0
Os07t0583600-01	Rice	plasma membrane	48.82	49.63
TraesCS2B01G217500.1	Wheat	cytosol	49.55	49.46
HORVU2Hr1G036280.1	Barley	cytosol	49.55	49.19
TraesCS2A01G189600.1	Wheat	cytosol	49.19	49.1
HORVU4Hr1G071670.1	Barley	cytosol	47.38	48.88
TraesCS2D01G198200.1	Wheat	cytosol	49.01	48.83
TraesCS5D01G419400.2	Wheat	cytosol	48.46	48.73
TraesCS4B01G266700.1	Wheat	cytosol	47.2	48.6
TraesCS4D01G266400.1	Wheat	cytosol	47.02	48.51
TraesCS4A01G039000.1	Wheat	nucleus	42.86	48.47
Zm00001d006701_P001	Maize	cytosol	48.1	48.01
Zm00001d030500_P001	Maize	nucleus	47.02	47.97
EER97449	Sorghum	cytosol	47.38	47.9
Zm00001d021946_P001	Maize	cytosol	47.2	46.77
HORVU5Hr1G099160.1	Barley	plastid	47.74	41.9
Solyc12g005340.1.1	Tomato	cytosol	41.41	41.04
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	41.59	39.45
Solyc04g064550.1.1	Tomato	mitochondrion	36.71	36.06
Solyc04g011630.1.1	Tomato	cytosol	8.86	28.82
Solyc06g036170.1.1	Tomato	nucleus	28.75	26.59
Solyc03g025170.1.1	Tomato	nucleus	28.57	25.04
Solyc01g100200.2.1	Tomato	nucleus	24.77	20.57
Solyc05g053090.1.1	Tomato	cytosol	27.49	20.46
Solyc06g082530.1.1	Tomato	cytosol	24.05	20.37
Solyc06g076280.1.1	Tomato	cytosol	27.31	20.19
Solyc09g010920.1.1	Tomato	cytosol	26.22	19.05
Solyc10g086530.1.1	Tomato	cytosol	25.86	18.79

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	UniProt:K4BPY6	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45
InterPro:Scarecrow-like_13	EnsemblPlantsGene:Solyc04g014830.1	EnsemblPlants:Solyc04g014830.1.1	InterPro:TF_GRAS	UniParc:UPI00027667E4	SEG:seg

Description

No Description!

Coordinates

chr4:-:5064579..5066240

Molecular Weight (calculated)

61848.5 Da

IEP (calculated)

7.512

GRAVY (calculated)

-0.372

Length

553 amino acids

Sequence
(BLAST)

001: MQASQGPQRS CSVHKLYNKP MQQVQQNYTP CRASDNSNYN DGSNSQAQVS LTTENEKFFT VDTFPATDCA IYDGDPSVSV SSNRSPFSSQ CSQSNMFEQR
101: RSYEKTAGSP VSLCSGVDDS NGKKHELREL NNKLLRPESD IDDSCSCSLN GVVSKHFSLT RRNQVLDVAS RLDLKELLVA CAEAVDEADT STAEVLMDAL
201: EKRVSVYGEP MQRLSAYMLE GLRARLLSSG SNIYKKLKCN EPTSSELLSY MQVLYHITPY FKFAYMSANV VISEAMKNEN RIHIIDFQIA QGSQWVFLIH
301: YLARRPGGPP FLRITGIDDS QSAHARGGGL QLVGERLASI AKSCGVPFEF HTAALSGCMV KLENLRVRHG ESLAVNFPYM LHHMPDESVS TMNHRDRLLR
401: LVKSLSPKIV ALVEQEMNTN TAPFLPRFRE TLDYHKAIFE SVDVTRPRND MQRIRSEEHC IARDVVNLIA CEGADRVERH EVFGKWRSRL LMAGFTPCPL
501: SPSVAEAIKV MLKEYSSNYK LAESQGALYI GWNNRALATS SAWQLPHSLP LGS

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.