Factsheet for Solyc06g036170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076932	Potato	nucleus	93.48	92.24
Solyc03g025170.1.1	Tomato	nucleus	68.23	64.66
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	53.68	54.5
CDY27821	Canola	cytosol	39.8	53.6
CDY00533	Canola	cytosol	39.8	53.36
Bra028312.1-P	Field mustard	cytosol	39.97	52.64
KRG91573	Soybean	plastid	46.82	47.14
KRH35251	Soybean	plastid	46.32	46.95
CDY27063	Canola	cytosol, plastid	43.81	45.49
Bra022596.1-P	Field mustard	plastid	43.98	45.42
AT5G52510.1	Thale cress	nucleus	47.83	44.69
CDX91655	Canola	cytosol	43.81	44.56
KRH38397	Soybean	plastid	38.96	43.15
KRH08880	Soybean	plastid	47.16	42.92
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	39.63	40.58
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	37.79	40.21
GSMUA_AchrUn_...	Banana	plastid	39.3	40.17
GSMUA_Achr1P03650_001	Banana	mitochondrion	36.45	38.25
Os04t0580300-01	Rice	cytosol, nucleus, plastid	38.46	37.16
GSMUA_Achr9P18770_001	Banana	cytosol	35.28	37.08
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	37.96	36.44
Zm00001d002573_P001	Maize	cytosol	37.96	36.44
TraesCS2B01G413500.1	Wheat	cytosol	37.29	35.34
TraesCS2D01G393200.1	Wheat	cytosol	36.96	35.25
Os02t0681900-01	Rice	cytosol	36.29	35.11
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	36.96	35.02
EES12703	Sorghum	cytosol, nucleus, plastid	37.63	34.51
GSMUA_Achr4P24960_001	Banana	cytosol	27.76	34.23
EES05727	Sorghum	cytosol	35.95	34.18
Zm00001d051461_P001	Maize	cytosol	34.45	33.94
Solyc06g035620.2.1	Tomato	cytosol	17.89	32.82
Solyc04g064550.1.1	Tomato	mitochondrion	30.43	32.33
HORVU2Hr1G094040.2	Barley	cytosol, plastid	19.57	30.39
Solyc07g047950.1.1	Tomato	mitochondrion	26.76	29.36
Solyc04g011630.1.1	Tomato	cytosol	8.19	28.82
Solyc11g012510.1.1	Tomato	mitochondrion	26.09	28.78
Solyc04g014830.1.1	Tomato	mitochondrion	26.59	28.75
Solyc07g065270.1.1	Tomato	nucleus	25.59	28.44
Solyc12g005340.1.1	Tomato	cytosol	24.75	26.52
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	24.75	25.39
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	9.36	16.82
Solyc01g100200.2.1	Tomato	nucleus	18.56	16.67
Solyc06g082530.1.1	Tomato	cytosol	17.22	15.77
Solyc06g076280.1.1	Tomato	cytosol	18.73	14.97
Solyc09g010920.1.1	Tomato	cytosol	18.56	14.59
Solyc10g086530.1.1	Tomato	cytosol	17.39	13.67
Solyc05g053090.1.1	Tomato	cytosol	16.89	13.59

Protein Annotations

MapMan:15.5.12	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	UniProt:K4C4Y5	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF4	EnsemblPlantsGene:Solyc06g036170.1	EnsemblPlants:Solyc06g036170.1.1	InterPro:TF_GRAS	UniParc:UPI0002765F4E	SEG:seg

Description

No Description!

Coordinates

chr6:+:25637986..25639782

Molecular Weight (calculated)

66006.1 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.390

Length

598 amino acids

Sequence
(BLAST)

001: MSSDFSGGVP DFHGGAGRSS LIPMNNSQPQ IQLTQRPDGV SQNLHRRPMF IGKRSLAAFQ QQQQFQFLQQ QQQQQGLGFY LRNVKPRNYQ QASPISPLDY
101: SVSSSLISSE FSPMTPRHPL PISTANTNGV LSSGNPNCSA VASYLNQVQN SLYQESEEKM MNRLHELEKQ LLEDNNEEEE DTVSVVTNND EWSETIKNLI
201: TPTSNHLSPA SSTSSCSSSM ESPPVSSPRQ SIVEAATAII DGKTNVAVQI LTRLAQVADV RGSSEQRLTA YMVSALRSRV NSTEYPPPVM ELRSKEHAVS
301: AQNLYEISPC FKLGFMAANF AIVEAVADHP SNKIHVIDFD IGQGGQYLHL LHALASKKTD YPISLRITAI TTEFTVRADH SLKSIEDDLR SLANKIGISL
401: IFKVISRTIT DLSRGKLGIE HDEALAVNFA YRLYRLPDES VTTENLRDEL LRRVKGLSPK VVTLVEQELN GNTAAFVARV NEACGYYGAL LDSLDATVSR
501: EETGRVKIEE GLSRKLTNSV ACEGRDRLER CEVFGKWRAR MSMAGFGPRP MSQQIADSLL KRLNSGPRGN PGFNVNEQSG GIRFGWMGKT LTVASAWC

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.