Factsheet for Os04t0580300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	75.44	74.96
Zm00001d002573_P001	Maize	cytosol	74.96	74.48
TraesCS2D01G393200.1	Wheat	cytosol	74.31	73.37
TraesCS2B01G413500.1	Wheat	cytosol	74.64	73.22
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	74.47	73.06
EES12703	Sorghum	cytosol, nucleus, plastid	75.77	71.93
Os02t0681900-01	Rice	cytosol	63.33	63.43
HORVU2Hr1G094040.2	Barley	cytosol, plastid	37.96	61.04
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	47.33	50.17
GSMUA_AchrUn_...	Banana	plastid	47.01	49.74
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	43.13	47.51
GSMUA_Achr1P03650_001	Banana	mitochondrion	43.13	46.84
GSMUA_Achr9P18770_001	Banana	cytosol	40.55	44.11
GSMUA_Achr4P24960_001	Banana	cytosol	34.41	43.92
CDY27821	Canola	cytosol	30.86	43.02
CDY00533	Canola	cytosol	30.69	42.6
Bra028312.1-P	Field mustard	cytosol	30.86	42.07
Solyc06g036170.1.1	Tomato	nucleus	37.16	38.46
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	36.35	38.2
Bra022596.1-P	Field mustard	plastid	35.54	38.0
CDY27063	Canola	cytosol, plastid	35.22	37.85
PGSC0003DMT400076932	Potato	nucleus	36.83	37.62
CDX91655	Canola	cytosol	35.7	37.59
AT5G52510.1	Thale cress	nucleus	37.0	35.78
Solyc03g025170.1.1	Tomato	nucleus	36.35	35.66
KRH35251	Soybean	plastid	33.12	34.75
PGSC0003DMT400026240	Potato	nucleus, plastid	36.51	34.56
KRG91573	Soybean	plastid	32.96	34.34
KRH38397	Soybean	plastid	28.76	32.96
KRH08880	Soybean	plastid	33.6	31.66
Os01t0881500-01	Rice	cytosol	26.17	29.29
Os07t0583600-01	Rice	plasma membrane	22.78	25.92
Os03t0193000-01	Rice	plastid	22.13	25.61
Os07t0545800-01	Rice	cytosol, nucleus	23.26	25.22
Os11t0706200-00	Rice	nucleus	19.39	20.24
Os11t0705900-01	Rice	cytosol	19.55	18.85
Os11t0705200-01	Rice	cytosol	18.74	16.76
Os12t0573200-01	Rice	cytosol, plasma membrane	19.55	16.4
Os03t0690600-03	Rice	cytosol	18.74	15.87
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	16.16	15.72
Os11t0139600-01	Rice	nucleus	13.41	14.24
Os01t0842200-01	Rice	cytosol	18.26	13.78

Protein Annotations

MapMan:15.5.12	EntrezGene:4336759	EMBL:AK100294	ProteinID:BAF15560.1	ProteinID:BAS90641.1	ProteinID:CAE01834.2
ProteinID:EAZ31737.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EnsemblPlantsGene:Os04g0580300	EnsemblPlants:Os04t0580300-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF127	UniProt:Q7X7C0	InterPro:TF_GRAS	UniParc:UPI00001B0E3A	RefSeq:XP_015637100.1	SEG:seg

Description

GRAS transcription factor domain containing protein. (Os04t0580300-01)

Coordinates

chr4:-:29275043..29277269

Molecular Weight (calculated)

64921.9 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.139

Length

619 amino acids

Sequence
(BLAST)

001: MEPGAPWRDP RQGYLYGVGS AVQMPMQQRS DAAAAGGVLK RSLGDMERWQ QHQHQQRQIA MQQQLYLRTV RQRTAAASAA VSPLTSADIA AVLGGPPSQP
101: LVLSGSSMGG AFGSPSSTLS SITTASRAVA MPLMQPQLQR QQQVTYMASS PQVQAFGTAR ALPPAPATSD LSILQELEKQ LLGDDDEVEA AMSGTGSAVT
201: GSEWEEQLNS ITAAPSPPLT AATTPNNNNN AVGMTRSPSN SSTSTASSSA SCSPPTSATT SRQLLSEAAA AIADGHNETA ATHLTALKRA ANSRGDVEQR
301: LVAMMVAALS SRIGQTASVP DICGGETRAG SQLLHDISPC FRLALHAANV AIVDAVGDHR AIHLVDFDVS APQHADLIRC LAARRLPGTS LKVTAVTDPA
401: SPFTQSVTAT LHLQKLAERA GIDYRFKMVS CRAGEIEASK LGCEAGEALA VNLAFALSHV PDESVSPANP RDEILRRVRA LGPQVVALVE QELNSNTAPL
501: TTRFTDACAH YGAILESLDA TIPRESAERA RAEAALGGRA ANAVAREGAD RLERCEVFGK WRSRFGMAGF RPVALGPGIA DQVLARQGPV AAGFAVKAEN
601: GVLRLGWMGR VVTVASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.