Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030744_P001 | Maize | cytosol | 52.71 | 79.06 |
| TraesCS5D01G092000.1 | Wheat | cytosol | 63.01 | 75.49 |
| Zm00001d041536_P001 | Maize | cytosol | 70.19 | 72.96 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 72.9 | 72.21 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 72.49 | 71.91 |
| EES16206 | Sorghum | cytosol | 70.73 | 71.51 |
| Os11t0705200-01 | Rice | cytosol | 51.9 | 55.35 |
| Os11t0705900-01 | Rice | cytosol | 45.53 | 52.34 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 30.89 | 50.78 |
| Os11t0706200-00 | Rice | nucleus | 39.16 | 48.74 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 38.48 | 44.65 |
| Os03t0690600-03 | Rice | cytosol | 43.5 | 43.91 |
| Os01t0842200-01 | Rice | cytosol | 44.04 | 39.63 |
| Os11t0139600-01 | Rice | nucleus | 27.37 | 34.65 |
| Os03t0193000-01 | Rice | plastid | 18.83 | 25.98 |
| Os07t0583600-01 | Rice | plasma membrane | 18.97 | 25.74 |
| Os01t0881500-01 | Rice | cytosol | 18.29 | 24.41 |
| Os07t0545800-01 | Rice | cytosol, nucleus | 18.16 | 23.47 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 16.4 | 19.55 |
| Os02t0681900-01 | Rice | cytosol | 15.85 | 18.93 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:4352595 | ProteinID:ABA99681.1 | EMBL:AK111522 | EMBL:AK121943 | ProteinID:BAF30114.1 |
| ProteinID:BAT17760.1 | ProteinID:EAZ20951.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR005202 | EnsemblPlantsGene:Os12g0573200 | EnsemblPlants:Os12t0573200-01 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF41 | UniProt:Q2QNA3 | InterPro:TF_GRAS | UniParc:UPI0000680DA0 | RefSeq:XP_015620149.1 |
| SEG:seg | : | : | : | : | : |
Description
GRAS transcription factor domain containing protein. (Os12t0573200-01)
Coordinates
chr12:+:23634672..23637678
Molecular Weight (calculated)
81369.4 Da
IEP (calculated)
4.953
GRAVY (calculated)
-0.305
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSAADSFP ACGDDAIRDV YGIGGGGEED DPSLFLYLSD LAPVSPSAYL DLPPSPPPPT TTATTMVKEG EEAPEDLVLP FISRMLMEED IDDKFFYDYP
101: DNPALLQAQQ PFLEILSDPS SNSRSSNSDD PRLSPTSSSD TSAAINSYDA AATATAVAAA AVPVPQYESI ELDPAAFFAA ANSDLMSSAF LKGMEEANKF
201: LPTENKLIID LEASSENNYL RGLEEAKRFL PSDDKLQVGF AAAAAPVVSV KKEAVDVVVA TASGGGGRGR KNPYDDEELE LEGGRSSKQT AVQGDDVAAR
301: AMFDKVMMPS HENCTEMMEK LRIAMKEEAA KNEASAGGKG GNGKVKGGRR GGRDVVDLRT LLIHCAQAVA TDDRRSATEL LKQIKQHAKP TGDATQRLAH
401: CFAEGLQARI AGTGSLVHQS LVAKRTSAVD ILQAYQLYMA AICFKKVSFI FSNQTIYNAS LGKKKIHIVD YGIQYGFQWP CFLRRISQRE GGPPEVRMTG
501: IDLPQPGFRP TERIEETGHR LSKYAQEFGV PFKYNAIAAV KMESVRKEDL NIDPDEVLIV NCQYQFKNLM DESVVIDSPR DIVLSNIRKM QPHVFIHAIV
601: NGSFSAPFFV TRFREALFFY SALFDVLDAT TPRESEQRLL IEQNIFGRAA LNVIACEGID RVERPETYKQ WQVRNQRAGF KQLPLNPEIV QVVRNKVKDC
701: YHKDFVIDID HQWLLQGWKG RILYAISTWT PNDALSYF
101: DNPALLQAQQ PFLEILSDPS SNSRSSNSDD PRLSPTSSSD TSAAINSYDA AATATAVAAA AVPVPQYESI ELDPAAFFAA ANSDLMSSAF LKGMEEANKF
201: LPTENKLIID LEASSENNYL RGLEEAKRFL PSDDKLQVGF AAAAAPVVSV KKEAVDVVVA TASGGGGRGR KNPYDDEELE LEGGRSSKQT AVQGDDVAAR
301: AMFDKVMMPS HENCTEMMEK LRIAMKEEAA KNEASAGGKG GNGKVKGGRR GGRDVVDLRT LLIHCAQAVA TDDRRSATEL LKQIKQHAKP TGDATQRLAH
401: CFAEGLQARI AGTGSLVHQS LVAKRTSAVD ILQAYQLYMA AICFKKVSFI FSNQTIYNAS LGKKKIHIVD YGIQYGFQWP CFLRRISQRE GGPPEVRMTG
501: IDLPQPGFRP TERIEETGHR LSKYAQEFGV PFKYNAIAAV KMESVRKEDL NIDPDEVLIV NCQYQFKNLM DESVVIDSPR DIVLSNIRKM QPHVFIHAIV
601: NGSFSAPFFV TRFREALFFY SALFDVLDAT TPRESEQRLL IEQNIFGRAA LNVIACEGID RVERPETYKQ WQVRNQRAGF KQLPLNPEIV QVVRNKVKDC
701: YHKDFVIDID HQWLLQGWKG RILYAISTWT PNDALSYF
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.