Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G266400.1 | Wheat | cytosol | 80.93 | 80.78 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 80.93 | 80.78 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 73.27 | 80.16 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 80.0 | 79.85 |
| EER95348 | Sorghum | cytosol | 79.81 | 79.66 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 79.81 | 79.52 |
| Bra026077.1-P | Field mustard | cytosol | 36.45 | 66.33 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 39.63 | 64.63 |
| Bra015156.1-P | Field mustard | cytosol | 37.57 | 63.21 |
| CDY00883 | Canola | cytosol | 45.61 | 60.25 |
| AT2G04890.1 | Thale cress | cytosol | 45.79 | 59.32 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 43.93 | 59.19 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.88 | 57.8 |
| CDY71156 | Canola | cytosol, plastid | 42.06 | 57.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.05 | 56.31 |
| CDY07309 | Canola | cytosol | 25.23 | 56.25 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 57.2 | 56.15 |
| CDY22807 | Canola | nucleus | 43.93 | 55.95 |
| CDY37124 | Canola | nucleus | 43.93 | 55.95 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 51.96 | 55.94 |
| PGSC0003DMT400015696 | Potato | cytosol | 55.89 | 55.89 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 51.78 | 55.73 |
| AT5G48150.4 | Thale cress | cytosol | 51.03 | 55.71 |
| KRH74015 | Soybean | cytosol | 56.07 | 55.45 |
| CDY00074 | Canola | cytosol, plastid | 51.4 | 55.33 |
| CDY19966 | Canola | cytosol | 51.03 | 55.26 |
| CDY05700 | Canola | cytosol, plastid | 51.22 | 55.13 |
| KRH14104 | Soybean | cytosol | 56.07 | 55.05 |
| Bra036185.1-P | Field mustard | cytosol | 50.84 | 54.95 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 51.03 | 54.93 |
| CDY71174 | Canola | cytosol, plastid | 51.03 | 54.93 |
| Os07t0583600-01 | Rice | plasma membrane | 54.95 | 54.04 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.95 | 53.95 |
| Bra018860.1-P | Field mustard | nucleus | 51.78 | 52.76 |
| Solyc07g065270.1.1 | Tomato | nucleus | 52.52 | 52.23 |
| PGSC0003DMT400057111 | Potato | nucleus | 52.15 | 51.96 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 52.71 | 51.74 |
| PGSC0003DMT400060553 | Potato | cytosol | 50.65 | 51.72 |
| KRG98562 | Soybean | nucleus | 52.34 | 51.38 |
| KRH46306 | Soybean | cytosol | 52.34 | 51.38 |
| KRH14274 | Soybean | cytosol | 51.78 | 50.83 |
| KRH73868 | Soybean | cytosol | 51.59 | 50.64 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.47 | 50.56 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 51.03 | 50.37 |
| KRH01979 | Soybean | cytosol | 51.03 | 50.09 |
| KRH51175 | Soybean | cytosol | 50.47 | 49.82 |
| KRH11548 | Soybean | nucleus | 51.03 | 49.46 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 50.47 | 48.82 |
| KRH36572 | Soybean | cytosol | 49.91 | 48.72 |
| AT4G17230.1 | Thale cress | cytosol | 47.29 | 47.83 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.91 | 47.76 |
| CDY35589 | Canola | cytosol | 47.29 | 47.65 |
| CDY42968 | Canola | cytosol | 47.48 | 47.48 |
| CDY58168 | Canola | plastid | 46.92 | 47.36 |
| Bra021063.1-P | Field mustard | plastid | 46.92 | 47.36 |
| Bra026237.1-P | Field mustard | plastid | 47.29 | 47.29 |
| CDY50128 | Canola | cytosol, plastid | 46.92 | 47.09 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 52.15 | 46.42 |
| KRH38269 | Soybean | cytosol | 28.97 | 43.91 |
| Os07t0545800-01 | Rice | cytosol, nucleus | 45.61 | 42.73 |
| Os01t0881500-01 | Rice | cytosol | 39.63 | 38.34 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.68 | 34.83 |
| Os02t0681900-01 | Rice | cytosol | 26.54 | 22.98 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 25.61 | 22.13 |
| Os11t0706200-00 | Rice | nucleus | 24.11 | 21.75 |
| Os11t0705900-01 | Rice | cytosol | 25.23 | 21.03 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 24.49 | 20.6 |
| Os11t0705200-01 | Rice | cytosol | 25.79 | 19.94 |
| Os03t0690600-03 | Rice | cytosol | 26.17 | 19.15 |
| Os12t0573200-01 | Rice | cytosol, plasma membrane | 25.98 | 18.83 |
| Os01t0842200-01 | Rice | cytosol | 26.54 | 17.32 |
| Os11t0139600-01 | Rice | nucleus | 16.07 | 14.75 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:4331920 | ProteinID:ABF94424.1 | EMBL:AK073386 | ProteinID:BAF11159.1 | ProteinID:BAS82739.1 |
| InterPro:CIGR2 | ProteinID:EEE58484.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR005202 | EnsemblPlantsGene:Os03g0193000 | EnsemblPlants:Os03t0193000-01 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 | UniProt:Q10QK3 | InterPro:TF_GRAS | UniParc:UPI0000DB4C79 | RefSeq:XP_015630858.1 |
| RefSeq:XP_015630859.1 | RefSeq:XP_015630860.1 | RefSeq:XP_015630861.1 | RefSeq:XP_015630862.1 | RefSeq:XP_015630863.1 | SEG:seg |
Description
GRAS transcription factor domain containing protein. (Os03t0193000-01)
Coordinates
chr3:+:4847241..4853828
Molecular Weight (calculated)
59651.2 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.375
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMQASNRPY RYPDNSQIPY YSRSSMHVGQ NGTYHVQQNH EDLYASSDDG SQNGNSKAQG LQAQYCTLDS SSGNFVYPAH SSTSSHISGS PISQQDSHSE
101: HTSGSPASAS CVTEVPGLRF TTIEEIENAM FGPEPDTVSS DCSLLTDSAF YQDNWREHLG INTGDLKQVI AACGKAVDEN SWYRDLLISE LRNMVSISGE
201: PMQRLGAYML EGLVARLSST GHALYKSLKC KEPTSFELMS YMHLLYEICP FFKFGYMSAN GAIAEAVKGE NFVHIIDFQI AQGSQWATMI QALAARPGGP
301: PYLRITGIDD SNSAHARGGG LDIVGRRLFN IAQSCGLPFE FNAVPAASHE VMLEHLDIRS GEVIVVNFAY QLHHTPDESV GIENHRDRIL RMVKGLSPRV
401: VTLVEQEANT NTAPFFNRYL ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERVER HEPFGKWRAR LSMAGFRPYP LSALVNNTIK
501: KLLDSYHSYY KLEERDGALY LGWKNRKLVV SSAWR
101: HTSGSPASAS CVTEVPGLRF TTIEEIENAM FGPEPDTVSS DCSLLTDSAF YQDNWREHLG INTGDLKQVI AACGKAVDEN SWYRDLLISE LRNMVSISGE
201: PMQRLGAYML EGLVARLSST GHALYKSLKC KEPTSFELMS YMHLLYEICP FFKFGYMSAN GAIAEAVKGE NFVHIIDFQI AQGSQWATMI QALAARPGGP
301: PYLRITGIDD SNSAHARGGG LDIVGRRLFN IAQSCGLPFE FNAVPAASHE VMLEHLDIRS GEVIVVNFAY QLHHTPDESV GIENHRDRIL RMVKGLSPRV
401: VTLVEQEANT NTAPFFNRYL ETLDYYTAMF EAIDVACPRD DKKRISTEQH CVARDIVNLI ACEGAERVER HEPFGKWRAR LSMAGFRPYP LSALVNNTIK
501: KLLDSYHSYY KLEERDGALY LGWKNRKLVV SSAWR
001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.