Factsheet for Bra036185.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19966	Canola	cytosol	97.37	97.57
CDY00074	Canola	cytosol, plastid	97.58	97.18
Bra020715.1-P	Field mustard	cytosol, plastid	88.69	88.33
AT5G48150.4	Thale cress	cytosol	85.66	86.53
Bra015156.1-P	Field mustard	cytosol	46.46	72.33
Bra026077.1-P	Field mustard	cytosol	42.02	70.75
GSMUA_Achr4P07010_001	Banana	cytosol	43.84	66.16
VIT_12s0057g00560.t01	Wine grape	cytosol	70.51	64.04
PGSC0003DMT400015696	Potato	cytosol	68.48	63.36
KRH14104	Soybean	cytosol	68.89	62.57
KRH74015	Soybean	cytosol	68.28	62.48
Solyc07g047950.1.1	Tomato	mitochondrion	68.48	62.2
TraesCS5A01G414000.1	Wheat	cytosol	50.1	58.22
GSMUA_Achr4P11050_001	Banana	nucleus	44.65	55.67
Bra018860.1-P	Field mustard	nucleus	58.18	54.86
GSMUA_AchrUn_...	Banana	nucleus	47.27	54.67
TraesCS5A01G409800.1	Wheat	nucleus, plastid	53.94	53.29
Os03t0193000-01	Rice	plastid	54.95	50.84
Zm00001d048199_P001	Maize	mitochondrion, nucleus	54.75	50.56
Zm00001d030500_P001	Maize	nucleus	55.15	50.37
EER95348	Sorghum	cytosol	53.74	49.63
HORVU4Hr1G071670.1	Barley	cytosol	53.74	49.63
HORVU2Hr1G036280.1	Barley	cytosol	55.76	49.55
TraesCS5D01G419400.2	Wheat	cytosol	54.75	49.27
Os07t0583600-01	Rice	plasma membrane	54.14	49.26
TraesCS4D01G266400.1	Wheat	cytosol	53.33	49.25
TraesCS2A01G189600.1	Wheat	cytosol	54.95	49.1
TraesCS2B01G217500.1	Wheat	cytosol	54.75	48.92
TraesCS2D01G198200.1	Wheat	cytosol	54.75	48.83
TraesCS4B01G266700.1	Wheat	cytosol	52.93	48.79
Zm00001d021946_P001	Maize	cytosol	54.55	48.39
EER97449	Sorghum	cytosol	53.33	48.26
TraesCS4A01G039000.1	Wheat	nucleus	47.47	48.06
Zm00001d006701_P001	Maize	cytosol	53.74	48.01
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	39.19	47.55
Bra021063.1-P	Field mustard	plastid	46.06	43.02
HORVU5Hr1G099160.1	Barley	plastid	54.14	42.54
Bra026237.1-P	Field mustard	plastid	45.86	42.43
Bra012280.1-P	Field mustard	cytosol	41.82	37.7
Bra028312.1-P	Field mustard	cytosol	28.48	31.06
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	19.19	29.97
Bra022596.1-P	Field mustard	plastid	29.09	24.87
Bra015584.1-P	Field mustard	cytosol	20.2	22.94
Bra028391.1-P	Field mustard	nucleus	25.86	20.65
Bra033813.1-P	Field mustard	nucleus	23.84	20.27
Bra028390.1-P	Field mustard	cytosol	27.47	19.26
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	25.45	18.72
Bra035653.1-P	Field mustard	cytosol	26.67	18.28
Bra031581.1-P	Field mustard	cytosol	24.24	17.96
Bra031580.1-P	Field mustard	cytosol	24.44	17.54
Bra030688.1-P	Field mustard	nucleus	26.06	17.36

Protein Annotations

EnsemblPlants:Bra036185.1	EnsemblPlants:Bra036185.1-P	EnsemblPlantsGene:Bra036185	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002541E52
UniProt:M4F531	MapMan:15.5.12	:	:	:	:

Description

AT5G48150 (E=2e-237) PAT1 | PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor

Coordinates

chrA09:-:2282713..2284593

Molecular Weight (calculated)

55643.5 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.271

Length

495 amino acids

Sequence
(BLAST)

001: MYKHTRQEIE AYSLPPFEAN SVGKLRYIPV NNSRKRYCML EPSSSLPDST VLVSNNNNNS THEDTSASCV TDDFNDKIKE LETAMMGPDS LDLALYYNDS
101: FVSTPCQVTN SWRSTLEAVS RRDLRADLVS CAKAMSENDL MMANSMMEKL RLMVSVSGEP IQRLGAYLLE GLVAQLASSG SSIYKSLNRC PEPASNELLS
201: YMHILYEVCP YFKFGYMSAN GAIAEAMKNE NRVHIIDFQI GPGSQWVTLI QAFAERPGGP PWIRITGIDD MTSAYARGGG LSIVGNRLAK LAKKFNVPFE
301: FNSVSVSVAE VKHNNLGVRT GEALAVNFAF VLHHMPDESV STENHRDRLL RMVKGLSPKV VTLVEQESNT NTAAFFPRFM ETMDYYDAMF ESIDVTLPRN
401: HKQRINVEQH CLARDVVNII ACEGADRVER HELLGKWRSR FGMAGFTSYP LSLLVNSTIK RLLSNYSDKY RLEERDGALY LGWMKRDLVA SCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.