Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G189600.1 | Wheat | cytosol | 97.84 | 98.01 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 97.3 | 97.47 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 96.94 | 96.59 |
| Os07t0583600-01 | Rice | plasma membrane | 83.78 | 85.48 |
| EER97449 | Sorghum | cytosol | 79.82 | 80.99 |
| Zm00001d006701_P001 | Maize | cytosol | 79.28 | 79.42 |
| Zm00001d021946_P001 | Maize | cytosol | 77.66 | 77.24 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 41.26 | 69.82 |
| Bra026077.1-P | Field mustard | cytosol | 36.4 | 68.71 |
| Bra015156.1-P | Field mustard | cytosol | 36.4 | 63.52 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.14 | 61.71 |
| CDY71156 | Canola | cytosol, plastid | 42.16 | 60.0 |
| CDY00883 | Canola | cytosol | 43.06 | 59.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.41 | 58.88 |
| CDY07309 | Canola | cytosol | 25.41 | 58.75 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 57.48 | 58.53 |
| CDY22807 | Canola | nucleus | 44.14 | 58.33 |
| CDY37124 | Canola | nucleus | 44.14 | 58.33 |
| AT2G04890.1 | Thale cress | cytosol | 43.24 | 58.11 |
| KRH74015 | Soybean | cytosol | 56.4 | 57.86 |
| KRH14104 | Soybean | cytosol | 56.58 | 57.61 |
| PGSC0003DMT400015696 | Potato | cytosol | 55.32 | 57.38 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 56.22 | 57.25 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.86 | 56.88 |
| AT5G48150.4 | Thale cress | cytosol | 49.55 | 56.12 |
| CDY05700 | Canola | cytosol, plastid | 49.73 | 55.53 |
| Bra018860.1-P | Field mustard | nucleus | 52.43 | 55.43 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 49.55 | 55.33 |
| CDY71174 | Canola | cytosol, plastid | 49.55 | 55.33 |
| CDY19966 | Canola | cytosol | 49.19 | 55.26 |
| CDY00074 | Canola | cytosol, plastid | 49.37 | 55.13 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 49.37 | 55.13 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 49.19 | 54.93 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 54.41 | 54.91 |
| Bra036185.1-P | Field mustard | cytosol | 48.83 | 54.75 |
| Solyc07g065270.1.1 | Tomato | nucleus | 52.43 | 54.09 |
| PGSC0003DMT400057111 | Potato | nucleus | 52.25 | 54.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 51.89 | 53.73 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.09 | 52.06 |
| PGSC0003DMT400060553 | Potato | cytosol | 49.01 | 51.91 |
| KRH11548 | Soybean | nucleus | 51.35 | 51.63 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 50.63 | 51.56 |
| KRH36572 | Soybean | cytosol | 50.81 | 51.46 |
| KRG98562 | Soybean | nucleus | 50.45 | 51.38 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 50.09 | 51.29 |
| KRH14274 | Soybean | cytosol | 49.91 | 50.83 |
| KRH73868 | Soybean | cytosol | 49.73 | 50.64 |
| KRH51175 | Soybean | cytosol | 49.37 | 50.55 |
| KRH46306 | Soybean | cytosol | 49.37 | 50.28 |
| KRH01979 | Soybean | cytosol | 48.83 | 49.72 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 48.83 | 49.01 |
| Bra021063.1-P | Field mustard | plastid | 46.31 | 48.49 |
| CDY58168 | Canola | plastid | 46.31 | 48.49 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 52.43 | 48.42 |
| CDY50128 | Canola | cytosol, plastid | 46.49 | 48.41 |
| PGSC0003DMT400021748 | Potato | nucleus | 48.47 | 48.12 |
| CDY35589 | Canola | cytosol | 45.95 | 48.02 |
| CDY42968 | Canola | cytosol | 45.59 | 47.29 |
| Bra026237.1-P | Field mustard | plastid | 45.59 | 47.29 |
| AT4G17230.1 | Thale cress | cytosol | 45.05 | 47.26 |
| KRH38269 | Soybean | cytosol | 27.75 | 43.63 |
| TraesCS2D01G220200.1 | Wheat | cytosol | 43.42 | 42.28 |
| TraesCS3D01G403100.1 | Wheat | cytosol | 38.2 | 38.41 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.26 | 35.44 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 28.11 | 24.88 |
| TraesCS4D01G135900.1 | Wheat | cytosol | 27.21 | 23.67 |
| TraesCS4D01G136100.1 | Wheat | cytosol | 23.78 | 22.6 |
| TraesCS4D01G135500.1 | Wheat | cytosol | 25.23 | 21.67 |
| TraesCS4D01G136300.1 | Wheat | cytosol | 26.31 | 21.66 |
| TraesCS4D01G136200.1 | Wheat | cytosol | 23.6 | 21.55 |
| TraesCS7D01G174100.1 | Wheat | cytosol | 26.49 | 20.94 |
| TraesCS4D01G332000.1 | Wheat | cytosol | 25.41 | 20.89 |
| TraesCS7D01G174300.1 | Wheat | cytosol | 27.03 | 20.58 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 24.32 | 20.55 |
| TraesCS4D01G136400.1 | Wheat | mitochondrion | 26.13 | 20.37 |
| TraesCS4D01G136000.1 | Wheat | cytosol | 23.78 | 20.34 |
| TraesCS5D01G092000.1 | Wheat | cytosol | 22.52 | 20.29 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 24.32 | 19.26 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 23.78 | 19.13 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 23.24 | 19.08 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 25.05 | 19.07 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 24.14 | 18.79 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 24.32 | 18.62 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 25.59 | 18.35 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 23.6 | 18.14 |
| TraesCS3D01G354100.1 | Wheat | cytosol, extracellular, nucleus | 26.13 | 17.73 |
| TraesCS4D01G136500.1 | Wheat | peroxisome | 23.96 | 17.34 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G198200.1 | EnsemblPlantsGene:TraesCS2D01G198200 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr2D:-:145894004..145895671
Molecular Weight (calculated)
61345.6 Da
IEP (calculated)
6.371
GRAVY (calculated)
-0.371
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPTSRMI HPFSNMQRQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HHYSLKSHSS DASYENQVAQ MKHTLDSSAA AGCMRHDSPS SHSFTPPSIG
101: SGSGSPSSHD DSHSDSTNGS PVSASCVTVT TEDPNDLKQK LKDLEAEMLG PDAETVNSLE SSVAKQLSLE PEKWAQMMDF PRGDLKELLL ACARAVEEKN
201: MYAVDVMVPE LRKMVSVSGT PLERLGAYMV EGLVARLASS GHSIYKALRC KEPKSSDLLS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE DRIHIIDFHI
301: AQGAQWISLL QALAARPGGP PTVRITGIDD TVSAYARGGG LDLVGRRLSH IAGLCKVPFE FHSVAMAGEE VEEGHLGVVP GEALTVNFTL ELHHIPDETV
401: STANHRDRIL RLVKGLRPRV LTLVEQESNT NTAPFPQRFA ETLEYYTAIF ESIDLTLPRD DRERVNMEQH CLAREVVNLI ACEGAERVER HEVFGKWKAR
501: LTMAGFRPSP LSSLVNATIS TLLQSYSENY KLAERDGALY LGWKSKPLVV SSAWH
101: SGSGSPSSHD DSHSDSTNGS PVSASCVTVT TEDPNDLKQK LKDLEAEMLG PDAETVNSLE SSVAKQLSLE PEKWAQMMDF PRGDLKELLL ACARAVEEKN
201: MYAVDVMVPE LRKMVSVSGT PLERLGAYMV EGLVARLASS GHSIYKALRC KEPKSSDLLS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE DRIHIIDFHI
301: AQGAQWISLL QALAARPGGP PTVRITGIDD TVSAYARGGG LDLVGRRLSH IAGLCKVPFE FHSVAMAGEE VEEGHLGVVP GEALTVNFTL ELHHIPDETV
401: STANHRDRIL RLVKGLRPRV LTLVEQESNT NTAPFPQRFA ETLEYYTAIF ESIDLTLPRD DRERVNMEQH CLAREVVNLI ACEGAERVER HEVFGKWKAR
501: LTMAGFRPSP LSSLVNATIS TLLQSYSENY KLAERDGALY LGWKSKPLVV SSAWH
001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.