Factsheet for TraesCS2D01G220200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G214400.1	Wheat	cytosol	99.12	99.12
TraesCS2B01G239400.1	Wheat	cytosol	98.25	98.25
HORVU2Hr1G043780.1	Barley	cytosol	95.44	95.44
Os07t0545800-01	Rice	cytosol, nucleus	89.47	89.32
EER97346	Sorghum	cytosol	87.37	87.37
GSMUA_Achr8P03610_001	Banana	cytosol	21.93	86.81
Zm00001d006551_P001	Maize	golgi, mitochondrion	84.74	78.28
GSMUA_Achr6P24310_001	Banana	cytosol	63.68	67.85
Solyc06g035620.2.1	Tomato	cytosol	37.37	65.34
VIT_19s0014g04940.t01	Wine grape	cytosol	59.65	58.32
KRH22210	Soybean	cytosol, plastid	58.07	57.37
KRH27129	Soybean	plastid	56.14	57.04
KRH55599	Soybean	plastid	56.67	56.87
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	50.53	55.38
KRH25905	Soybean	cytosol, plastid	55.09	55.28
Solyc12g005340.1.1	Tomato	cytosol	53.68	54.84
PGSC0003DMT400056120	Potato	cytosol	52.81	53.85
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	54.91	53.69
PGSC0003DMT400049492	Potato	cytosol	54.56	53.44
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	48.42	47.34
TraesCS4D01G266400.1	Wheat	cytosol	41.4	44.03
TraesCS5D01G419400.2	Wheat	cytosol	42.11	43.64
TraesCS2D01G198200.1	Wheat	cytosol	42.28	43.42
TraesCS3D01G403100.1	Wheat	cytosol	36.49	37.68
TraesCS2D01G393200.1	Wheat	cytosol	24.91	22.65
TraesCS4D01G136100.1	Wheat	cytosol	22.28	21.75
TraesCS4D01G135900.1	Wheat	cytosol	23.68	21.16
TraesCS4D01G136200.1	Wheat	cytosol	22.28	20.89
TraesCS4D01G136300.1	Wheat	cytosol	23.33	19.73
TraesCS5D01G092000.1	Wheat	cytosol	21.05	19.48
TraesCS4D01G135500.1	Wheat	cytosol	21.93	19.35
TraesCS7D01G174100.1	Wheat	cytosol	23.16	18.8
TraesCS4D01G136000.1	Wheat	cytosol	21.4	18.8
TraesCS4D01G136400.1	Wheat	mitochondrion	23.33	18.68
TraesCS4D01G332000.1	Wheat	cytosol	22.11	18.67
TraesCS1D01G030800.1	Wheat	cytosol	22.63	18.4
TraesCS7D01G174300.1	Wheat	cytosol	23.51	18.38
TraesCS1D01G031000.1	Wheat	cytosol	23.16	18.21
TraesCS5D01G494900.1	Wheat	cytosol	20.88	18.11
TraesCS3D01G067900.1	Wheat	nucleus	21.58	17.83
TraesCS1D01G030900.1	Wheat	cytosol	21.58	17.25
TraesCS3D01G354100.1	Wheat	cytosol, extracellular, nucleus	23.68	16.5
TraesCS3D01G067700.1	Wheat	cytosol	20.88	16.48
TraesCS1D01G031200.1	Wheat	cytosol	21.05	16.46
TraesCS3D01G067800.1	Wheat	nucleus	19.3	16.27
TraesCS4D01G136500.1	Wheat	peroxisome	21.4	15.91
TraesCS5D01G152700.1	Wheat	cytosol, plastid	21.23	15.63

Protein Annotations

EnsemblPlants:TraesCS2D01G220200.1	EnsemblPlantsGene:TraesCS2D01G220200	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18
PFAM:PF03514	PFscan:PS50985	MapMan:15.5.12	:	:	:

Description

No Description!

Coordinates

chr2D:-:187529785..187531497

Molecular Weight (calculated)

64246.3 Da

IEP (calculated)

5.950

GRAVY (calculated)

-0.453

Length

570 amino acids

Sequence
(BLAST)

001: MDLHQLFKYR LTGANVFCEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL SNTPDNQSST ETISAQSISP LEADSSYIKA GSIRENIQVR
101: PDPLYATSRH NMQQTLRDIE NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPY FASGGYPTAS YEFRPEKRQR ELRDDRQQIV
201: KGLLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE
301: ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG NMLTSMSNEF NIPLEFTPLS VYATQVTEEM LKIRPGEAVA
401: VNFTLQLHHT PDESVDVNNP RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI SVEQHCLAKD IVNIIACEGK
501: DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC YSDKYTLEEK DGAMLLGWNT RKLISASAWH

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.