Factsheet for VIT_19s0014g04940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	20.07	81.25
KRH27129	Soybean	plastid	70.15	72.91
Solyc06g035620.2.1	Tomato	cytosol	40.65	72.7
KRH22210	Soybean	cytosol, plastid	71.36	72.1
KRH55599	Soybean	plastid	69.47	71.3
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	71.01	71.01
PGSC0003DMT400049492	Potato	cytosol	70.5	70.62
KRH25905	Soybean	cytosol, plastid	68.61	70.42
PGSC0003DMT400056120	Potato	cytosol	67.07	69.95
Solyc12g005340.1.1	Tomato	cytosol	66.55	69.53
GSMUA_Achr6P24310_001	Banana	cytosol	58.66	63.93
EER97346	Sorghum	cytosol	59.35	60.7
Os07t0545800-01	Rice	cytosol, nucleus	59.35	60.6
TraesCS2B01G239400.1	Wheat	cytosol	58.83	60.18
HORVU2Hr1G043780.1	Barley	cytosol	58.66	60.0
TraesCS2D01G220200.1	Wheat	cytosol	58.32	59.65
TraesCS2A01G214400.1	Wheat	cytosol	57.98	59.3
Zm00001d006551_P001	Maize	golgi, mitochondrion	58.49	55.27
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	43.91	49.23
VIT_19s0090g01740.t01	Wine grape	cytosol	45.97	49.17
VIT_12s0057g00560.t01	Wine grape	cytosol	45.8	48.99
VIT_00s0463g00020.t01	Wine grape	nucleus	43.22	46.24
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	44.43	44.43
VIT_04s0044g01370.t01	Wine grape	nucleus	39.45	40.49
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	37.22	38.41
VIT_06s0004g04990.t01	Wine grape	cytosol	22.98	30.32
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	29.33	29.03
VIT_13s0019g01780.t01	Wine grape	nucleus	23.16	22.5
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	26.07	21.44
VIT_06s0004g04970.t01	Wine grape	cytosol	23.84	21.12
VIT_13s0019g01710.t01	Wine grape	cytosol	25.9	20.77
VIT_06s0004g04980.t01	Wine grape	nucleus	24.53	20.31
VIT_06s0004g04950.t01	Wine grape	cytosol	26.24	20.29
VIT_13s0019g01810.t01	Wine grape	cytosol	25.21	19.65
VIT_13s0019g01790.t01	Wine grape	cytosol	23.5	19.05
VIT_13s0019g01700.t01	Wine grape	cytosol	24.53	18.82
VIT_06s0004g04960.t01	Wine grape	nucleus	25.56	18.7

Protein Annotations

EntrezGene:100267541	wikigene:100267541	MapMan:15.5.12	ProteinID:CCB46467	ProteinID:CCB46467.1	UniProt:F6H2I7
EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EntrezGene:LOC100267541	wikigene:LOC100267541	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF18	InterPro:TF_GRAS	UniParc:UPI00019855E4	ArrayExpress:VIT_19s0014g04940	EnsemblPlantsGene:VIT_19s0014g04940	EnsemblPlants:VIT_19s0014g04940.t01
unigene:Vvi.1581	RefSeq:XP_002282942	RefSeq:XP_002282942.1	:	:	:

Description

No Description!

Coordinates

chr19:-:5275817..5279566

Molecular Weight (calculated)

64964.8 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.360

Length

583 amino acids

Sequence
(BLAST)

001: MDSRQIFGYS VTGADLSFTS SHPTVPSIPN RLFGSLKFDL GNSPNSPFSN LFDCDTLTTF SDSQEQHSST ENLSELSASC SSVETNSYFN HLSPSVGCRR
101: DSLQGYSSGT SLLQNASPCH NIKHALLELE SALMAPDADE VTTPSPSLGE DRGPQIQVPT PRAWSQEAQG SLVLQPQPSF SSSYRKFSDG VHIEKRQKAM
201: EEGSLQSNPP GNLKELLIEC ARALSENRLD DFKKLVEKAR GAVSISGEPI QRLGAYLVEG LVARTEASGN NIYHALRCRE PESKDLLSYM QILYEICPYL
301: KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWVTLLQA LAARPSGAPR VRITGIDDPV NKYARGAGLD AVGKRLAAIS EKFKIPVEFH PVPVFAPDIT
401: QEMLDVRPGE ALAVNFPLQL HHTPDESVDV NNPRDELLRM VKSLSPKVTT LVEQESNTNT TPFFTRFIET LDYYSAMFES IDVALPRERK ERINVEQHCL
501: ARDIVNIIAC EGKERVERHE LFGKWKSRLT MAGFRQYPLS TYVNSVIRTL LRCYSEHYTL VERDGAMLLG WKDRNLVSAS AWY

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.