Factsheet for VIT_16s0050g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27821	Canola	cytosol	43.63	57.88
CDY00533	Canola	cytosol	43.12	56.95
Bra028312.1-P	Field mustard	cytosol	43.63	56.61
Solyc03g025170.1.1	Tomato	nucleus	58.4	54.52
Solyc06g036170.1.1	Tomato	nucleus	54.5	53.68
PGSC0003DMT400026240	Potato	nucleus, plastid	59.59	53.67
PGSC0003DMT400076932	Potato	nucleus	55.18	53.63
KRG91573	Soybean	plastid	52.97	52.53
KRH35251	Soybean	plastid	52.12	52.03
KRH38397	Soybean	plastid	46.69	50.93
KRH08880	Soybean	plastid	55.69	49.92
CDY27063	Canola	cytosol, plastid	48.73	49.83
Bra022596.1-P	Field mustard	plastid	48.56	49.4
CDX91655	Canola	cytosol	48.9	48.98
AT5G52510.1	Thale cress	nucleus	53.14	48.91
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	41.94	42.29
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	40.07	41.99
GSMUA_AchrUn_...	Banana	plastid	40.75	41.03
GSMUA_Achr1P03650_001	Banana	mitochondrion	39.05	40.35
GSMUA_Achr9P18770_001	Banana	cytosol	38.71	40.07
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	38.54	36.44
Os04t0580300-01	Rice	cytosol, nucleus, plastid	38.2	36.35
Zm00001d002573_P001	Maize	cytosol	38.37	36.28
Os02t0681900-01	Rice	cytosol	37.86	36.08
GSMUA_Achr4P24960_001	Banana	cytosol	29.71	36.08
EES05727	Sorghum	cytosol	38.37	35.93
TraesCS2D01G393200.1	Wheat	cytosol	38.2	35.89
TraesCS2B01G413500.1	Wheat	cytosol	37.86	35.34
Zm00001d051461_P001	Maize	cytosol	36.33	35.26
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	37.69	35.18
EES12703	Sorghum	cytosol, nucleus, plastid	38.71	34.97
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	32.43	33.81
VIT_04s0044g01370.t01	Wine grape	nucleus	31.92	33.1
HORVU2Hr1G094040.2	Barley	cytosol, plastid	20.03	30.65
VIT_12s0057g00560.t01	Wine grape	cytosol	28.01	30.28
VIT_19s0090g01740.t01	Wine grape	cytosol	27.16	29.36
VIT_19s0014g04940.t01	Wine grape	cytosol	29.03	29.33
VIT_00s0463g00020.t01	Wine grape	nucleus	26.83	28.99
VIT_06s0004g04990.t01	Wine grape	cytosol	18.34	24.43
VIT_13s0019g01780.t01	Wine grape	nucleus	19.02	18.67
VIT_06s0004g04970.t01	Wine grape	cytosol	19.86	17.78
VIT_06s0004g04980.t01	Wine grape	nucleus	20.37	17.05
VIT_13s0019g01810.t01	Wine grape	cytosol	21.05	16.58
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	19.69	16.36
VIT_13s0019g01790.t01	Wine grape	cytosol	19.69	16.13
VIT_13s0019g01710.t01	Wine grape	cytosol	19.86	16.09
VIT_06s0004g04950.t01	Wine grape	cytosol	20.2	15.78
VIT_13s0019g01700.t01	Wine grape	cytosol	20.03	15.53
VIT_06s0004g04960.t01	Wine grape	nucleus	18.85	13.93

Protein Annotations

MapMan:15.5.12	ProteinID:CCB47848	ProteinID:CCB47848.1	UniProt:F6H6D7	EMBL:FN595243	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4	TIGR:TC56138	InterPro:TF_GRAS
UniParc:UPI0002107EAC	ArrayExpress:VIT_16s0050g00950	EnsemblPlantsGene:VIT_16s0050g00950	EnsemblPlants:VIT_16s0050g00950.t01	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:17872783..17874912

Molecular Weight (calculated)

64424.4 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.373

Length

589 amino acids

Sequence
(BLAST)

001: MSSGFPGGAP DFYASGGIGG RSVAMNNNPH VPYRSQMPGI LVDPSSQIVQ RRPDWIGKRS LAEFQPRMYQ HASPISPLSP VDYSASISPE FPSVSAGRYG
101: LPLLQQLRPQ PIALGNNVMA PRTANLSTVT YPNFPHNRGA LQESEPESEK KIMNRLQELE KQLLDDDDVD QEGDAVSVVT HSEWSEAIQS LIIPNQKPIS
201: PSSSSSSTSS IASAVPICPK QSAHEAASAI SEGMLDAAME SLTRLTLVAN ARGNSEQRLA AYMASALKSR LSAAENPPPV AELYSKDHIM ATQMLYDMSP
301: CFKLGFMAAN LAILETTSSE QSAAKFHVLD FDIGQGGQYV NLVHALGARQ NGKHTSLKIT TIADPSNGGT DERLKVGEDL SQLAERLCIS LKFKVVTHKI
401: HELSRESLGC ESDEVLVVNL AFKLYKMPDE SVTTENPRDE LLRRVKSLQP RVVTVVEQEM NANTAPFLTR VNEACAYYGA LLDSLDSTVS RDRSERVQVE
501: ECLGRKLANS VACEGRDRVE RCEVFGKWRA RMGMAGFEPR PMSQHIADSM RSRVNSHQRG NPGFTVKEET GGICFGWNGR TLTVASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.