Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27063 | Canola | cytosol, plastid | 90.48 | 92.36 |
| CDY27821 | Canola | cytosol | 61.9 | 81.98 |
| CDY00533 | Canola | cytosol | 61.56 | 81.17 |
| AT5G52510.1 | Thale cress | nucleus | 79.59 | 73.12 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 48.98 | 48.9 |
| KRH35251 | Soybean | plastid | 46.26 | 46.1 |
| KRG91573 | Soybean | plastid | 46.09 | 45.62 |
| KRH08880 | Soybean | plastid | 50.34 | 45.05 |
| KRH38397 | Soybean | plastid | 41.33 | 45.0 |
| Solyc03g025170.1.1 | Tomato | nucleus | 47.79 | 44.53 |
| PGSC0003DMT400076932 | Potato | nucleus | 45.24 | 43.89 |
| Solyc06g036170.1.1 | Tomato | nucleus | 44.56 | 43.81 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 47.62 | 42.81 |
| GSMUA_AchrUn_... | Banana | plastid | 38.78 | 38.97 |
| GSMUA_Achr4P26400_001 | Banana | cytosol, mitochondrion, plastid | 37.93 | 38.18 |
| GSMUA_Achr9P18770_001 | Banana | cytosol | 36.9 | 38.14 |
| GSMUA_Achr5P12810_001 | Banana | cytosol, plastid | 35.88 | 37.54 |
| GSMUA_Achr1P03650_001 | Banana | mitochondrion | 36.22 | 37.37 |
| GSMUA_Achr4P24960_001 | Banana | cytosol | 30.1 | 36.49 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 37.59 | 35.7 |
| Os02t0681900-01 | Rice | cytosol | 37.41 | 35.6 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 37.59 | 35.02 |
| Zm00001d002573_P001 | Maize | cytosol | 37.07 | 34.99 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 37.07 | 34.99 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 37.07 | 34.77 |
| CDY71156 | Canola | cytosol, plastid | 22.79 | 34.36 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 36.73 | 34.23 |
| Zm00001d051461_P001 | Maize | cytosol | 35.03 | 33.94 |
| EES05727 | Sorghum | cytosol | 36.05 | 33.7 |
| EES12703 | Sorghum | cytosol, nucleus, plastid | 36.39 | 32.82 |
| CDY00883 | Canola | cytosol | 21.94 | 31.85 |
| CDY22807 | Canola | nucleus | 22.45 | 31.43 |
| CDY37124 | Canola | nucleus | 22.45 | 31.43 |
| CDX68389 | Canola | cytosol | 4.42 | 30.59 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 19.73 | 30.13 |
| CDY07309 | Canola | cytosol | 12.07 | 29.58 |
| CDY19966 | Canola | cytosol | 24.66 | 29.35 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 24.66 | 29.18 |
| CDY00074 | Canola | cytosol, plastid | 24.66 | 29.18 |
| CDY61060 | Canola | cytosol | 26.7 | 29.13 |
| CDY05700 | Canola | cytosol, plastid | 24.49 | 28.97 |
| CDY71174 | Canola | cytosol, plastid | 24.49 | 28.97 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 24.15 | 28.57 |
| CDY00377 | Canola | cytosol | 26.36 | 28.18 |
| CDY50240 | Canola | cytosol | 27.21 | 27.78 |
| CDY68224 | Canola | cytosol | 26.87 | 27.43 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 14.12 | 26.18 |
| CDY50128 | Canola | cytosol, plastid | 23.3 | 25.7 |
| CDY58168 | Canola | plastid | 23.13 | 25.66 |
| CDY35589 | Canola | cytosol | 23.13 | 25.61 |
| CDY42968 | Canola | cytosol | 23.3 | 25.61 |
| CDY39530 | Canola | cytosol | 20.41 | 19.39 |
| CDY47877 | Canola | nucleus | 19.9 | 18.93 |
| CDX82987 | Canola | nucleus | 18.54 | 18.14 |
| CDY71578 | Canola | nucleus, plastid | 15.82 | 17.85 |
| CDY06266 | Canola | cytosol | 18.71 | 17.41 |
| CDY33040 | Canola | nucleus | 17.52 | 17.25 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 18.54 | 16.2 |
| CDX79750 | Canola | peroxisome | 18.54 | 16.17 |
| CDX86475 | Canola | nucleus | 19.22 | 15.92 |
| CDY06265 | Canola | cytosol | 18.54 | 15.8 |
| CDY47878 | Canola | nucleus | 18.37 | 15.63 |
| CDX68388 | Canola | cytosol | 10.88 | 15.46 |
| CDY15616 | Canola | nucleus | 18.71 | 15.38 |
| CDY09912 | Canola | cytosol | 18.2 | 15.29 |
| CDX77228 | Canola | cytosol | 16.33 | 14.29 |
| CDY31749 | Canola | cytosol | 17.35 | 14.05 |
| CDY09911 | Canola | nucleus | 13.44 | 13.53 |
Protein Annotations
| EnsemblPlants:CDX91655 | EnsemblPlantsGene:GSBRNA2T00153111001 | GO:A0A078DQQ5 | InterPro:IPR005202 | InterPro:Scarecrow-like_8 | InterPro:TF_GRAS |
| ncoils:Coil | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF130 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX91655 |
| ProteinID:CDX91655.1 | SEG:seg | UniParc:UPI0004EDD2A2 | MapMan:15.5.12 | : | : |
Description
BnaC02g15050D
Coordinates
chrLK031868:+:1515196..1517076
Molecular Weight (calculated)
63578.5 Da
IEP (calculated)
5.880
GRAVY (calculated)
-0.258
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGFPNDGG GPEFYGGDGR SIPGGFGTVV NTVNNNPQAT YRSQIPGIFL DQTGNRFSGG NGIGGKRTLA DFQAAQQQQA AINAFLLRSV KPRTFQNLQS
101: PTIGLTSVND MSLFGGSSQT QHQSDLVGIR MGYGSSIEPV QNLNRVEESK NMLSSLRELE KQLLEDDDES DARGGDDDVS TITHSNSDWL HSLVTPVLSS
201: SPSSASSSST VCSRQTVMEI ATAISEGKTE IVAELLACVS PTPNQKTNSE EKLVNFMVTA LRLRINPAES RAPPSPAREL CGKEHLISTQ LLYELSPCFK
301: LGFMAANLAI LDAAGNNHDG GVLMHVVDFE IGEGGQYVNL LHALSTRRSG DNKHLVVKIT AVTNHGGEER LKAVGDRLSQ LGDRLGVSLR FNVVASLRLG
401: DISRESLGCG PDEPLAVNLA FKLYRVPDES VCVENPRDEL LRRVKGLEPR VVTLVEQEMN SNTAPFLGRV SEACACYGAL LDLVESSVPS SNLDRAKVEE
501: GIGRKLINAV ACEGIDRIER CEVFGKWRMR MSMAGFELMP LSEKIAESMK SRLGNGNRVH SGFTVKEDNG GVCFRWMGRT LAVASAWR
101: PTIGLTSVND MSLFGGSSQT QHQSDLVGIR MGYGSSIEPV QNLNRVEESK NMLSSLRELE KQLLEDDDES DARGGDDDVS TITHSNSDWL HSLVTPVLSS
201: SPSSASSSST VCSRQTVMEI ATAISEGKTE IVAELLACVS PTPNQKTNSE EKLVNFMVTA LRLRINPAES RAPPSPAREL CGKEHLISTQ LLYELSPCFK
301: LGFMAANLAI LDAAGNNHDG GVLMHVVDFE IGEGGQYVNL LHALSTRRSG DNKHLVVKIT AVTNHGGEER LKAVGDRLSQ LGDRLGVSLR FNVVASLRLG
401: DISRESLGCG PDEPLAVNLA FKLYRVPDES VCVENPRDEL LRRVKGLEPR VVTLVEQEMN SNTAPFLGRV SEACACYGAL LDLVESSVPS SNLDRAKVEE
501: GIGRKLINAV ACEGIDRIER CEVFGKWRMR MSMAGFELMP LSEKIAESMK SRLGNGNRVH SGFTVKEDNG GVCFRWMGRT LAVASAWR
001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR
Arabidopsis Description
SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.