Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22807 | Canola | nucleus | 99.52 | 99.52 |
| CDY71156 | Canola | cytosol, plastid | 86.9 | 93.59 |
| Bra018860.1-P | Field mustard | nucleus | 99.52 | 79.62 |
| CDY07309 | Canola | cytosol | 38.1 | 66.67 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 95.0 | 66.39 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 65.24 | 50.28 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 58.81 | 49.7 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 38.57 | 49.39 |
| CDY00883 | Canola | cytosol | 47.62 | 49.38 |
| CDY00074 | Canola | cytosol, plastid | 58.33 | 49.3 |
| CDY19966 | Canola | cytosol | 57.86 | 49.19 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 58.1 | 49.09 |
| CDY71174 | Canola | cytosol, plastid | 58.1 | 49.09 |
| CDY05700 | Canola | cytosol, plastid | 58.1 | 49.09 |
| KRH73868 | Soybean | cytosol | 63.57 | 48.99 |
| KRH14274 | Soybean | cytosol | 61.67 | 47.52 |
| KRH46306 | Soybean | cytosol | 61.67 | 47.52 |
| KRG98562 | Soybean | nucleus | 61.43 | 47.34 |
| Solyc07g065270.1.1 | Tomato | nucleus | 59.29 | 46.28 |
| PGSC0003DMT400057111 | Potato | nucleus | 59.05 | 46.18 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 46.43 | 45.77 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 53.81 | 45.11 |
| Os07t0583600-01 | Rice | plasma membrane | 58.1 | 44.85 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 58.81 | 44.58 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 42.14 | 44.58 |
| EER97449 | Sorghum | cytosol | 57.62 | 44.24 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 58.33 | 44.14 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 58.1 | 44.04 |
| Os03t0193000-01 | Rice | plastid | 55.95 | 43.93 |
| Zm00001d021946_P001 | Maize | cytosol | 58.33 | 43.91 |
| Zm00001d006701_P001 | Maize | cytosol | 57.62 | 43.68 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 57.86 | 43.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.81 | 42.99 |
| Zm00001d030500_P001 | Maize | nucleus | 55.24 | 42.8 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 54.29 | 42.54 |
| EER95348 | Sorghum | cytosol | 53.81 | 42.16 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 53.81 | 42.16 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 55.0 | 42.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 53.57 | 41.98 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 53.1 | 41.53 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 46.67 | 40.08 |
| CDY42968 | Canola | cytosol | 50.71 | 39.81 |
| CDY35589 | Canola | cytosol | 50.24 | 39.74 |
| CDY50128 | Canola | cytosol, plastid | 49.76 | 39.21 |
| CDY58168 | Canola | plastid | 49.29 | 39.06 |
| HORVU5Hr1G099160.1 | Barley | plastid | 53.57 | 35.71 |
| KRH38269 | Soybean | cytosol | 27.62 | 32.86 |
| CDY00377 | Canola | cytosol | 42.86 | 32.73 |
| CDY61060 | Canola | cytosol | 41.19 | 32.1 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 23.1 | 30.6 |
| CDY68224 | Canola | cytosol | 41.9 | 30.56 |
| CDY50240 | Canola | cytosol | 41.9 | 30.56 |
| CDX68389 | Canola | cytosol | 5.95 | 29.41 |
| CDY27821 | Canola | cytosol | 29.29 | 27.7 |
| CDY00533 | Canola | cytosol | 29.05 | 27.35 |
| CDY27063 | Canola | cytosol, plastid | 31.67 | 23.09 |
| CDX91655 | Canola | cytosol | 31.43 | 22.45 |
| CDY71578 | Canola | nucleus, plastid | 24.29 | 19.58 |
| CDY06266 | Canola | cytosol | 26.43 | 17.56 |
| CDX82987 | Canola | nucleus | 25.0 | 17.47 |
| CDY47877 | Canola | nucleus | 25.48 | 17.31 |
| CDY33040 | Canola | nucleus | 24.52 | 17.25 |
| CDY39530 | Canola | cytosol | 25.24 | 17.12 |
| CDX86475 | Canola | nucleus | 28.1 | 16.62 |
| CDY47878 | Canola | nucleus | 27.14 | 16.5 |
| CDY06265 | Canola | cytosol | 26.67 | 16.23 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 25.95 | 16.2 |
| CDX79750 | Canola | peroxisome | 25.71 | 16.02 |
| CDY09912 | Canola | cytosol | 26.67 | 16.0 |
| CDY15616 | Canola | nucleus | 26.9 | 15.8 |
| CDX68388 | Canola | cytosol | 15.48 | 15.7 |
| CDY31749 | Canola | cytosol | 26.43 | 15.29 |
| CDX77228 | Canola | cytosol | 24.05 | 15.03 |
| CDY09911 | Canola | nucleus | 18.1 | 13.01 |
Protein Annotations
| EnsemblPlants:CDY37124 | EnsemblPlantsGene:GSBRNA2T00063354001 | GO:A0A078HIE9 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF57 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY37124 | ProteinID:CDY37124.1 |
| SEG:seg | UniParc:UPI0004EEAF5D | UniProt:A0A078HIE9 | MapMan:15.5.12 | : | : |
Description
BnaC06g03750DBnaC06g03750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIE9]
Coordinates
chrLK032392:+:166148..168657
Molecular Weight (calculated)
46710.1 Da
IEP (calculated)
6.608
GRAVY (calculated)
-0.419
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATQKHIIQ DGSSMFYHQP SVKQMDISVQ TFDSYCTLES SSGTKSHPCP NNNITSSTTS FSSNGSPVSH SNNNNNTSHL SPDNNNSPLS GSSATNNNET
101: ELTSSGSSIY KALRCKDPTG PELLTYMHIL YEACPYFKFG YESANGAIAE AVKNESFVHI IDFQISQGGQ WVSLIRALGA RPGGPPRVRI TGIDDPRSSF
201: ARQGGLELVG QRLGKLAEMC GVPFEFHGAA LCCTEVEIEK LGVRNGEALA VNFPLVLHHM PDESVTVENH RDRLLRLVKR LSPNVVTLVE QEANTNTAPF
301: LPRFVETMNH YLAVFESIDV KLARDHKERI NVEQHCLARE VVNLIACEGV EREERHEPLG KWRSRFHMAG FKPYPLSSYV NATIKGLLES YSEKYTLEER
401: DGALYLGWKN QPLITSCAWR
101: ELTSSGSSIY KALRCKDPTG PELLTYMHIL YEACPYFKFG YESANGAIAE AVKNESFVHI IDFQISQGGQ WVSLIRALGA RPGGPPRVRI TGIDDPRSSF
201: ARQGGLELVG QRLGKLAEMC GVPFEFHGAA LCCTEVEIEK LGVRNGEALA VNFPLVLHHM PDESVTVENH RDRLLRLVKR LSPNVVTLVE QEANTNTAPF
301: LPRFVETMNH YLAVFESIDV KLARDHKERI NVEQHCLARE VVNLIACEGV EREERHEPLG KWRSRFHMAG FKPYPLSSYV NATIKGLLES YSEKYTLEER
401: DGALYLGWKN QPLITSCAWR
001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]
SUBAcon: [mitochondrion,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.